Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_A15
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   431   e-123
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   418   e-119
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   364   e-103
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   333   8e-94
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    38   1e-04
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.0  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.0  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  431 bits (1063), Expect = e-123
 Identities = 203/221 (91%), Positives = 206/221 (93%)
 Frame = +3

Query: 3   STXTGHLIYKCGGIDKRTIDKFEKEAQXMGKGSXXYAWVLDKLKAERERGIXIDIALWKX 182
           ST TGHLIYKCGGIDKRTI+KFEKEAQ MGKGS  YAWVLDKLKAERERGI IDIALWK 
Sbjct: 21  STTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80

Query: 183 EAXXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 362
           E   YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA
Sbjct: 81  ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 140

Query: 363 FTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN 542
           FTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN
Sbjct: 141 FTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN 200

Query: 543 MLEPSTKMPWFKGWQVERKEGKADGKCLIEALXAILPPARP 665
           MLE S+KMPWFKGW VERKEGK +GKCLIEAL AILPP RP
Sbjct: 201 MLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRP 241


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  418 bits (1029), Expect = e-119
 Identities = 196/221 (88%), Positives = 203/221 (91%)
 Frame = +3

Query: 3   STXTGHLIYKCGGIDKRTIDKFEKEAQXMGKGSXXYAWVLDKLKAERERGIXIDIALWKX 182
           ST TGHLIYKCGGIDKRTI+KFEKEAQ MGKGS  YAWVLDKLKAERERGI IDIALWK 
Sbjct: 21  STTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80

Query: 183 EAXXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 362
           E   YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG GEFEAGISKNGQTREHALLA
Sbjct: 81  ETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGIGEFEAGISKNGQTREHALLA 140

Query: 363 FTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN 542
           FTLGVKQLIVGVNKMD T+PPYSE RFEEIKKEVSSYIKKIGYN A+VAFVPISGWHGDN
Sbjct: 141 FTLGVKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYNTASVAFVPISGWHGDN 200

Query: 543 MLEPSTKMPWFKGWQVERKEGKADGKCLIEALXAILPPARP 665
           MLEPS K PW+KGW+VERK+G ADGK LIEAL AILPP+RP
Sbjct: 201 MLEPSPKTPWYKGWKVERKDGNADGKTLIEALDAILPPSRP 241


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  364 bits (895), Expect = e-103
 Identities = 171/184 (92%), Positives = 173/184 (94%)
 Frame = +3

Query: 114 WVLDKLKAERERGIXIDIALWKXEAXXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 293
           WVLDKLKAERERGI IDIALWK E   YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 294 AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY 473
           AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSY
Sbjct: 61  AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSY 120

Query: 474 IKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALXAILP 653
           IKKIGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK +GKCLIEAL AILP
Sbjct: 121 IKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILP 180

Query: 654 PARP 665
           P RP
Sbjct: 181 PTRP 184


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  333 bits (819), Expect = 8e-94
 Identities = 156/168 (92%), Positives = 158/168 (94%)
 Frame = +3

Query: 162 DIALWKXEAXXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 341
           DIALWK E   YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 342 REHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPI 521
           REHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFEEIKKEVSSYIKKIGYNPAAVAFVPI
Sbjct: 61  REHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPI 120

Query: 522 SGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALXAILPPARP 665
           SGWHGDNMLE S+KMPWFKGW VERKEGK +GKCLIEAL AILPP RP
Sbjct: 121 SGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRP 168


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 36/117 (30%), Positives = 52/117 (44%)
 Frame = +3

Query: 201 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 380
           VT +D PGH  FI     G    D  VL+VAA  G  E       QT +   +A    V 
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKE-------QTLQSIEMAKDAKV- 246

Query: 381 QLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE 551
            +IV +NK+D       + ++E  K  +   I+++G     +  V IS   G N+ E
Sbjct: 247 PIIVAINKIDKPNIDIIKVQYELAKHGI--VIEELG---GEIQCVKISALKGINLRE 298


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 563 FG*RLQHVVSVPSRNGHESDSSWV 492
           FG  L H++ V  +N   + + WV
Sbjct: 35  FGLSLHHIIDVDEKNQILTTNCWV 58


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 406 WIPLNHHTVSPDLRKSRRKY 465
           W+P+N +  S +L   +R+Y
Sbjct: 443 WLPVNENYKSLNLAAQKREY 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,211
Number of Sequences: 438
Number of extensions: 3794
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)