Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_A09
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    35   0.018
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         29   0.92 
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S...    27   4.9  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    26   8.5  

>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 34.7 bits (76), Expect = 0.018
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 146 NQDVARSPAEVPNDPGKMFVGGLSWQTSPGTL 241
           N+D A   +    + GKMF+GGL+W+T+  +L
Sbjct: 148 NEDNAEETSPFNREDGKMFIGGLNWETTDDSL 179


>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 325 ERFAGDWASPTDARDALPPVK*ARPATAE 239
           ER+AGD   PT  R A+P  +  +P T E
Sbjct: 134 ERYAGDERPPTSMRQAIPKDEDRKPRTLE 162


>SPBC1773.03c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 432 YLKSLSKLC*RYGVSFYRSILM 497
           Y K++ K+C +YGV FY   +M
Sbjct: 238 YFKAMRKVCDKYGVIFYLDEVM 259


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
 Frame = +2

Query: 59  PSPTAXRSIVVVVP--TGSHRVPAPSPMEXQNQDVARSPAEVPNDPG 193
           P P+   S     P  + S   PAP+P   QN+    +P   P   G
Sbjct: 62  PPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPPQGG 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,229,190
Number of Sequences: 5004
Number of extensions: 61956
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)