Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_A09
(913 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0338 + 16916429-16916650,16916728-16917900 30 2.2
07_03_1061 + 23651404-23651625,23651764-23652954 30 2.2
11_06_0497 + 24337772-24337993,24338042-24338083,24338176-24339357 29 3.9
07_03_0341 - 16956199-16956687 29 3.9
12_02_0849 - 23640091-23640279,23640537-23640677,23640756-236422... 29 5.1
11_01_0115 - 889159-889921,889962-890053,890141-890359,890738-89... 29 5.1
07_01_0628 - 4691991-4692806,4694291-4694293,4694527-4694637 29 5.1
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934... 29 6.8
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51... 29 6.8
12_01_0911 + 8868557-8868664,8869415-8869420,8869774-8869928,887... 28 9.0
08_01_0153 - 1200121-1200465,1201693-1202920,1204517-1204602,120... 28 9.0
02_01_0229 + 1524951-1526174 28 9.0
02_01_0224 - 1461924-1462227,1462602-1462798,1463059-1463213,146... 28 9.0
>10_08_0338 + 16916429-16916650,16916728-16917900
Length = 464
Score = 30.3 bits (65), Expect = 2.2
Identities = 9/16 (56%), Positives = 15/16 (93%)
Frame = +2
Query: 182 NDPGKMFVGGLSWQTS 229
+D GK+F+GG+SW+T+
Sbjct: 3 SDQGKLFIGGISWETT 18
>07_03_1061 + 23651404-23651625,23651764-23652954
Length = 470
Score = 30.3 bits (65), Expect = 2.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 185 DPGKMFVGGLSWQTSPGTL 241
D GK+FVGG+SW+T L
Sbjct: 4 DSGKLFVGGISWETDEDRL 22
>11_06_0497 + 24337772-24337993,24338042-24338083,24338176-24339357
Length = 481
Score = 29.5 bits (63), Expect = 3.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 185 DPGKMFVGGLSWQTSPGTL 241
D GK+F+GG+SW T+ L
Sbjct: 4 DAGKLFIGGISWDTNEDRL 22
>07_03_0341 - 16956199-16956687
Length = 162
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 59 PSPTAXRSIVVVVPTGSHRVPAPSPMEXQNQDVARSPAEV 178
P P + I+ P HRVP+P+P++ + R EV
Sbjct: 5 PPPPSSHQIMSASPV-PHRVPSPAPIDDEEDKAKRKKTEV 43
>12_02_0849 - 23640091-23640279,23640537-23640677,23640756-23642203,
23642300-23642372,23642452-23642572,23642689-23642791,
23642979-23643052,23643140-23643285,23643368-23643476,
23643580-23643704,23643989-23644342,23644440-23644503,
23644581-23645032
Length = 1132
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 5 RPMSLVPVVGSAAERLREPSPTAXRSIVVVVPTGSHRVPAPSP 133
+PM++ PVV + + EP PT ++ VPT V P P
Sbjct: 903 KPMAIEPVVPTRKPIVIEPVPTRKPIVIEPVPTRKPIVTEPLP 945
>11_01_0115 -
889159-889921,889962-890053,890141-890359,890738-891835
Length = 723
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/76 (23%), Positives = 34/76 (44%)
Frame = +2
Query: 35 SAAERLREPSPTAXRSIVVVVPTGSHRVPAPSPMEXQNQDVARSPAEVPNDPGKMFVGGL 214
S+ ++ + A + IV+ + S P P+ + + + +P++ DP GG
Sbjct: 153 SSGNAVQSDATDAVKRIVLAPKSVSEAAPPPAVSAAKRRFSSPAPSK-QRDPSPSVKGGA 211
Query: 215 SWQTSPGTLGGGRSRS 262
S +SP G R+ S
Sbjct: 212 SRPSSPSVKGASRASS 227
>07_01_0628 - 4691991-4692806,4694291-4694293,4694527-4694637
Length = 309
Score = 29.1 bits (62), Expect = 5.1
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 191 GKMFVGGLSWQTSPGTL 241
G++FVGGLSW T+ TL
Sbjct: 7 GRIFVGGLSWDTTERTL 23
>03_04_0157 + 17791540-17791681,17792809-17792908,17793386-17793477,
17793562-17793620,17794135-17795637,17796478-17796720,
17796831-17797145,17797571-17797573,17798399-17798638,
17798975-17799259,17799335-17799556,17800105-17800266,
17800411-17800545,17802452-17802688,17802787-17802960,
17803692-17803934
Length = 1384
Score = 28.7 bits (61), Expect = 6.8
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -2
Query: 276 FHR*NERDLPPPSVPGLVCQLSPPTN-IFPGSLGTSAGLRATSW 148
FH N D+P V G VC + P+N F G G A L A +W
Sbjct: 935 FHSDNVYDIPNVRVNGQVCFTNFPSNTAFRGFGGPQAMLIAENW 978
>01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-514521,
514598-514736,514823-514923,514995-515666,515953-516038,
516112-516777,516874-517128,517231-517358,518645-518799,
518880-519133,519186-519260,519324-519399,519511-519644,
519871-520153,520692-520850,520940-521038,521142-521310,
521423-521653,522002-522114,524179-524310,524389-524469,
525641-525763
Length = 1570
Score = 28.7 bits (61), Expect = 6.8
Identities = 26/80 (32%), Positives = 31/80 (38%)
Frame = +2
Query: 29 VGSAAERLREPSPTAXRSIVVVVPTGSHRVPAPSPMEXQNQDVARSPAEVPNDPGKMFVG 208
V A R EPS TA V G++ +PA S QN RS +P + G
Sbjct: 979 VDRTARRAEEPSNTAVNGRVQGASPGTNEIPAVS---TQNMPTERSAENIPVARTEQH-G 1034
Query: 209 GLSWQTSPGTLGGGRSRSFH 268
P T G SRS H
Sbjct: 1035 NAKANLEP-TSGVNASRSSH 1053
>12_01_0911 +
8868557-8868664,8869415-8869420,8869774-8869928,
8870145-8871031,8871079-8871123,8872528-8872572,
8873025-8873513,8873603-8873733
Length = 621
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 5/31 (16%)
Frame = -1
Query: 292 DARDALPPVK*ARP-----ATAERTWTSLPA 215
+A DA+PPV ARP ATA R W++L A
Sbjct: 324 EADDAVPPVLPARPDYNDTATAHRFWSNLTA 354
>08_01_0153 -
1200121-1200465,1201693-1202920,1204517-1204602,
1205145-1205272,1205957-1205969
Length = 599
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 11 MSLVPVVGSAAERLREPSPTAXRSIVVVVPTGSHRVPAPSPME 139
+ LV V SA + EP A + ++ +V T RVP P+P E
Sbjct: 216 LELVDYVTSATGKFPEP---AVQEVIKMVSTNLFRVPNPAPRE 255
>02_01_0229 + 1524951-1526174
Length = 407
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 292 DARDALPPVK*ARPATAERTWTSLPAESSDEHLPRV 185
DAR P A P R+W+ LP E + E L RV
Sbjct: 7 DARPTKRPRAAAAPPAWSRSWSDLPVEIAGEILGRV 42
>02_01_0224 -
1461924-1462227,1462602-1462798,1463059-1463213,
1464101-1464207,1464289-1464375,1465332-1465414,
1465959-1466027,1466332-1466658,1466744-1466957,
1467170-1467267,1467516-1467554,1467672-1468160
Length = 722
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 249 PPPSVPGLVCQLSPP-TNIFPGSLGTSAGL 163
PPP P L+ L PP T+ +P S +A L
Sbjct: 36 PPPPPPDLISYLPPPSTSSYPSSSAAAAAL 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,616,662
Number of Sequences: 37544
Number of extensions: 446413
Number of successful extensions: 1621
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1620
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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