Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_A09
(913 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC001526-1|AAH01526.1| 328|Homo sapiens musashi homolog 2 (Dros... 44 8e-04
AC003982-3|AAB95636.1| 362|Homo sapiens WUGSC:H_166H1.2 protein. 37 0.12
AB012851-1|BAA33962.1| 362|Homo sapiens Musashi protein. 37 0.12
BC036708-1|AAH36708.1| 332|Homo sapiens heterogeneous nuclear r... 34 0.62
BC009359-1|AAH09359.1| 285|Homo sapiens heterogeneous nuclear r... 34 0.62
BC004561-1|AAH04561.1| 285|Homo sapiens heterogeneous nuclear r... 34 0.62
BC002625-1|AAH02625.1| 285|Homo sapiens heterogeneous nuclear r... 34 0.62
BC001616-1|AAH01616.1| 285|Homo sapiens heterogeneous nuclear r... 34 0.62
AK223425-1|BAD97145.1| 332|Homo sapiens heterogeneous nuclear r... 34 0.62
AK097657-1|BAC05134.1| 332|Homo sapiens protein ( Homo sapiens ... 34 0.62
AK093888-1|BAC04244.1| 251|Homo sapiens protein ( Homo sapiens ... 34 0.62
D89092-1|BAA24361.1| 301|Homo sapiens hnRNP JKTBP protein. 33 1.1
CR407623-1|CAG28551.1| 420|Homo sapiens HNRPDL protein. 33 1.1
BC071944-1|AAH71944.1| 420|Homo sapiens heterogeneous nuclear r... 33 1.1
BC011714-1|AAH11714.1| 420|Homo sapiens heterogeneous nuclear r... 33 1.1
BC007392-1|AAH07392.2| 415|Homo sapiens HNRPDL protein protein. 33 1.1
AY453824-1|AAR17782.1| 298|Homo sapiens CArG binding factor pro... 33 1.1
AC124016-2|AAY40914.1| 420|Homo sapiens unknown protein. 33 1.1
AB066484-1|BAB62188.1| 244|Homo sapiens JKTBP1delta6 protein. 33 1.1
AB017019-1|BAA75241.1| 420|Homo sapiens JKTBP2 protein. 33 1.1
AB017018-2|BAA75240.1| 301|Homo sapiens JKTBP1 protein. 33 1.1
AB017018-1|BAA75239.1| 420|Homo sapiens JKTBP2 protein. 33 1.1
U76713-1|AAC50956.1| 331|Homo sapiens ABBP-1 protein. 33 1.9
U02019-1|AAC50056.1| 286|Homo sapiens p37 AUF1 protein. 33 1.9
M65028-1|AAA36575.1| 284|Homo sapiens hnRNP type A/B protein pr... 33 1.9
D86967-1|BAA13203.2| 666|Homo sapiens KIAA0212 protein. 31 4.4
BC019088-1|AAH19088.1| 657|Homo sapiens ER degradation enhancer... 31 4.4
M23294-1|AAA52645.1| 556|Homo sapiens beta-hexosaminidase beta-... 31 5.8
M19735-1|AAA68620.1| 544|Homo sapiens beta-hexosaminidase beta-... 31 5.8
M13519-1|AAA51828.1| 572|Homo sapiens HEXB protein. 31 5.8
D55671-1|BAA09522.1| 267|Homo sapiens heterogeneous nuclear rib... 31 5.8
BT009919-1|AAP88921.1| 556|Homo sapiens hexosaminidase B (beta ... 31 5.8
BC067820-1|AAH67820.1| 434|Homo sapiens INPP5F protein protein. 31 5.8
BC017378-1|AAH17378.1| 556|Homo sapiens hexosaminidase B (beta ... 31 5.8
AY643499-1|AAV48875.1| 331|Homo sapiens ENC-1AS protein. 31 5.8
AF378118-1|AAM46114.1| 556|Homo sapiens cervical cancer proto-o... 31 5.8
AF026126-3|AAC23476.1| 336|Homo sapiens heterogeneous nuclear r... 31 5.8
AL137077-6|CAI11049.1| 296|Homo sapiens LSM14 homolog B (SCD6, ... 31 7.7
AL137077-5|CAI11048.1| 223|Homo sapiens LSM14 homolog B (SCD6, ... 31 7.7
AF118265-1|AAD21055.1| 502|Homo sapiens orphan G protein-couple... 31 7.7
>BC001526-1|AAH01526.1| 328|Homo sapiens musashi homolog 2
(Drosophila) protein.
Length = 328
Score = 44.0 bits (99), Expect = 8e-04
Identities = 18/32 (56%), Positives = 24/32 (75%)
Frame = +2
Query: 146 NQDVARSPAEVPNDPGKMFVGGLSWQTSPGTL 241
+Q + S + +DPGKMF+GGLSWQTSP +L
Sbjct: 6 SQGTSGSANDSQHDPGKMFIGGLSWQTSPDSL 37
>AC003982-3|AAB95636.1| 362|Homo sapiens WUGSC:H_166H1.2 protein.
Length = 362
Score = 36.7 bits (81), Expect = 0.12
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 134 MEXQNQDVARSPAEVPNDPGKMFVGGLSWQTS 229
ME + + P+DP KMF+GGLSWQT+
Sbjct: 1 METDAPQPGLASPDSPHDPCKMFIGGLSWQTT 32
>AB012851-1|BAA33962.1| 362|Homo sapiens Musashi protein.
Length = 362
Score = 36.7 bits (81), Expect = 0.12
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 134 MEXQNQDVARSPAEVPNDPGKMFVGGLSWQTS 229
ME + + P+DP KMF+GGLSWQT+
Sbjct: 1 METDAPQPGLASPDSPHDPCKMFIGGLSWQTT 32
>BC036708-1|AAH36708.1| 332|Homo sapiens heterogeneous nuclear
ribonucleoprotein A/B protein.
Length = 332
Score = 34.3 bits (75), Expect = 0.62
Identities = 21/75 (28%), Positives = 29/75 (38%)
Frame = +2
Query: 5 RPMSLVPVVGSAAERLREPSPTAXRSIVVVVPTGSHRVPAPSPMEXQNQDVARSPAEVPN 184
+PM + E + E A G PS + + + ++
Sbjct: 8 QPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEE 67
Query: 185 DPGKMFVGGLSWQTS 229
D GKMFVGGLSW TS
Sbjct: 68 DAGKMFVGGLSWDTS 82
>BC009359-1|AAH09359.1| 285|Homo sapiens heterogeneous nuclear
ribonucleoprotein A/B protein.
Length = 285
Score = 34.3 bits (75), Expect = 0.62
Identities = 21/75 (28%), Positives = 29/75 (38%)
Frame = +2
Query: 5 RPMSLVPVVGSAAERLREPSPTAXRSIVVVVPTGSHRVPAPSPMEXQNQDVARSPAEVPN 184
+PM + E + E A G PS + + + ++
Sbjct: 8 QPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEE 67
Query: 185 DPGKMFVGGLSWQTS 229
D GKMFVGGLSW TS
Sbjct: 68 DAGKMFVGGLSWDTS 82
>BC004561-1|AAH04561.1| 285|Homo sapiens heterogeneous nuclear
ribonucleoprotein A/B protein.
Length = 285
Score = 34.3 bits (75), Expect = 0.62
Identities = 21/75 (28%), Positives = 29/75 (38%)
Frame = +2
Query: 5 RPMSLVPVVGSAAERLREPSPTAXRSIVVVVPTGSHRVPAPSPMEXQNQDVARSPAEVPN 184
+PM + E + E A G PS + + + ++
Sbjct: 8 QPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEE 67
Query: 185 DPGKMFVGGLSWQTS 229
D GKMFVGGLSW TS
Sbjct: 68 DAGKMFVGGLSWDTS 82
>BC002625-1|AAH02625.1| 285|Homo sapiens heterogeneous nuclear
ribonucleoprotein A/B protein.
Length = 285
Score = 34.3 bits (75), Expect = 0.62
Identities = 21/75 (28%), Positives = 29/75 (38%)
Frame = +2
Query: 5 RPMSLVPVVGSAAERLREPSPTAXRSIVVVVPTGSHRVPAPSPMEXQNQDVARSPAEVPN 184
+PM + E + E A G PS + + + ++
Sbjct: 8 QPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEE 67
Query: 185 DPGKMFVGGLSWQTS 229
D GKMFVGGLSW TS
Sbjct: 68 DAGKMFVGGLSWDTS 82
>BC001616-1|AAH01616.1| 285|Homo sapiens heterogeneous nuclear
ribonucleoprotein A/B protein.
Length = 285
Score = 34.3 bits (75), Expect = 0.62
Identities = 21/75 (28%), Positives = 29/75 (38%)
Frame = +2
Query: 5 RPMSLVPVVGSAAERLREPSPTAXRSIVVVVPTGSHRVPAPSPMEXQNQDVARSPAEVPN 184
+PM + E + E A G PS + + + ++
Sbjct: 8 QPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEE 67
Query: 185 DPGKMFVGGLSWQTS 229
D GKMFVGGLSW TS
Sbjct: 68 DAGKMFVGGLSWDTS 82
>AK223425-1|BAD97145.1| 332|Homo sapiens heterogeneous nuclear
ribonucleoprotein AB isoform a variant protein.
Length = 332
Score = 34.3 bits (75), Expect = 0.62
Identities = 21/75 (28%), Positives = 29/75 (38%)
Frame = +2
Query: 5 RPMSLVPVVGSAAERLREPSPTAXRSIVVVVPTGSHRVPAPSPMEXQNQDVARSPAEVPN 184
+PM + E + E A G PS + + + ++
Sbjct: 8 QPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEE 67
Query: 185 DPGKMFVGGLSWQTS 229
D GKMFVGGLSW TS
Sbjct: 68 DAGKMFVGGLSWDTS 82
>AK097657-1|BAC05134.1| 332|Homo sapiens protein ( Homo sapiens
cDNA FLJ40338 fis, clone TESTI2032067, highly similar to
Rattus norvegicus mRNA for type A/B hnRNP protein p40.
).
Length = 332
Score = 34.3 bits (75), Expect = 0.62
Identities = 21/75 (28%), Positives = 29/75 (38%)
Frame = +2
Query: 5 RPMSLVPVVGSAAERLREPSPTAXRSIVVVVPTGSHRVPAPSPMEXQNQDVARSPAEVPN 184
+PM + E + E A G PS + + + ++
Sbjct: 8 QPMETTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEE 67
Query: 185 DPGKMFVGGLSWQTS 229
D GKMFVGGLSW TS
Sbjct: 68 DAGKMFVGGLSWDTS 82
>AK093888-1|BAC04244.1| 251|Homo sapiens protein ( Homo sapiens
cDNA FLJ36569 fis, clone TRACH2010824, highly similar to
Ribonucleoprotein. ).
Length = 251
Score = 34.3 bits (75), Expect = 0.62
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +2
Query: 194 KMFVGGLSWQTSPGTL 241
KMF+GGLSWQTSP +L
Sbjct: 18 KMFIGGLSWQTSPDSL 33
>D89092-1|BAA24361.1| 301|Homo sapiens hnRNP JKTBP protein.
Length = 301
Score = 33.5 bits (73), Expect = 1.1
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +2
Query: 185 DPGKMFVGGLSWQTSPGTLGGGRSRSFHRWKCITCVRR*CPVTSKT 322
D GKMF+GGLSW TS L SR + + C + PVT ++
Sbjct: 27 DDGKMFIGGLSWDTSKKDLTEYLSRF---GEVVDCTIKTDPVTGRS 69
>CR407623-1|CAG28551.1| 420|Homo sapiens HNRPDL protein.
Length = 420
Score = 33.5 bits (73), Expect = 1.1
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +2
Query: 185 DPGKMFVGGLSWQTSPGTLGGGRSRSFHRWKCITCVRR*CPVTSKT 322
D GKMF+GGLSW TS L SR + + C + PVT ++
Sbjct: 146 DDGKMFIGGLSWDTSKKDLTEYLSRF---GEVVDCTIKTDPVTGRS 188
>BC071944-1|AAH71944.1| 420|Homo sapiens heterogeneous nuclear
ribonucleoprotein D-like protein.
Length = 420
Score = 33.5 bits (73), Expect = 1.1
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +2
Query: 185 DPGKMFVGGLSWQTSPGTLGGGRSRSFHRWKCITCVRR*CPVTSKT 322
D GKMF+GGLSW TS L SR + + C + PVT ++
Sbjct: 146 DDGKMFIGGLSWDTSKKDLTEYLSRF---GEVVDCTIKTDPVTGRS 188
>BC011714-1|AAH11714.1| 420|Homo sapiens heterogeneous nuclear
ribonucleoprotein D-like protein.
Length = 420
Score = 33.5 bits (73), Expect = 1.1
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +2
Query: 185 DPGKMFVGGLSWQTSPGTLGGGRSRSFHRWKCITCVRR*CPVTSKT 322
D GKMF+GGLSW TS L SR + + C + PVT ++
Sbjct: 146 DDGKMFIGGLSWDTSKKDLTEYLSRF---GEVVDCTIKTDPVTGRS 188
>BC007392-1|AAH07392.2| 415|Homo sapiens HNRPDL protein protein.
Length = 415
Score = 33.5 bits (73), Expect = 1.1
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +2
Query: 185 DPGKMFVGGLSWQTSPGTLGGGRSRSFHRWKCITCVRR*CPVTSKT 322
D GKMF+GGLSW TS L SR + + C + PVT ++
Sbjct: 141 DDGKMFIGGLSWDTSKKDLTEYLSRF---GEVVDCTIKTDPVTGRS 183
>AY453824-1|AAR17782.1| 298|Homo sapiens CArG binding factor
protein.
Length = 298
Score = 33.5 bits (73), Expect = 1.1
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +2
Query: 185 DPGKMFVGGLSWQTSPGTLGGGRSRSFHRWKCITCVRR*CPVTSKT 322
D GKMF+GGLSW TS L SR + + C + PVT ++
Sbjct: 24 DDGKMFIGGLSWDTSKKDLTEYLSRF---GEVVDCTIKTDPVTGRS 66
>AC124016-2|AAY40914.1| 420|Homo sapiens unknown protein.
Length = 420
Score = 33.5 bits (73), Expect = 1.1
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +2
Query: 185 DPGKMFVGGLSWQTSPGTLGGGRSRSFHRWKCITCVRR*CPVTSKT 322
D GKMF+GGLSW TS L SR + + C + PVT ++
Sbjct: 146 DDGKMFIGGLSWDTSKKDLTEYLSRF---GEVVDCTIKTDPVTGRS 188
>AB066484-1|BAB62188.1| 244|Homo sapiens JKTBP1delta6 protein.
Length = 244
Score = 33.5 bits (73), Expect = 1.1
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +2
Query: 185 DPGKMFVGGLSWQTSPGTLGGGRSRSFHRWKCITCVRR*CPVTSKT 322
D GKMF+GGLSW TS L SR + + C + PVT ++
Sbjct: 27 DDGKMFIGGLSWDTSKKDLTEYLSRF---GEVVDCTIKTDPVTGRS 69
>AB017019-1|BAA75241.1| 420|Homo sapiens JKTBP2 protein.
Length = 420
Score = 33.5 bits (73), Expect = 1.1
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +2
Query: 185 DPGKMFVGGLSWQTSPGTLGGGRSRSFHRWKCITCVRR*CPVTSKT 322
D GKMF+GGLSW TS L SR + + C + PVT ++
Sbjct: 146 DDGKMFIGGLSWDTSKKDLTEYLSRF---GEVVDCTIKTDPVTGRS 188
>AB017018-2|BAA75240.1| 301|Homo sapiens JKTBP1 protein.
Length = 301
Score = 33.5 bits (73), Expect = 1.1
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +2
Query: 185 DPGKMFVGGLSWQTSPGTLGGGRSRSFHRWKCITCVRR*CPVTSKT 322
D GKMF+GGLSW TS L SR + + C + PVT ++
Sbjct: 27 DDGKMFIGGLSWDTSKKDLTEYLSRF---GEVVDCTIKTDPVTGRS 69
>AB017018-1|BAA75239.1| 420|Homo sapiens JKTBP2 protein.
Length = 420
Score = 33.5 bits (73), Expect = 1.1
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +2
Query: 185 DPGKMFVGGLSWQTSPGTLGGGRSRSFHRWKCITCVRR*CPVTSKT 322
D GKMF+GGLSW TS L SR + + C + PVT ++
Sbjct: 146 DDGKMFIGGLSWDTSKKDLTEYLSRF---GEVVDCTIKTDPVTGRS 188
>U76713-1|AAC50956.1| 331|Homo sapiens ABBP-1 protein.
Length = 331
Score = 32.7 bits (71), Expect = 1.9
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +2
Query: 185 DPGKMFVGGLSWQTS 229
D GKMFVGGLSW TS
Sbjct: 66 DAGKMFVGGLSWDTS 80
>U02019-1|AAC50056.1| 286|Homo sapiens p37 AUF1 protein.
Length = 286
Score = 32.7 bits (71), Expect = 1.9
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 98 PTGSHRVPAPS-PMEXQNQDVARSPAEVPNDPGKMFVGGLSWQTS 229
P R+ AP E + + S E D GKMF+GGLSW T+
Sbjct: 46 PGAEPRLEAPKGSAESEGAKIDASKNE--EDEGKMFIGGLSWDTT 88
>M65028-1|AAA36575.1| 284|Homo sapiens hnRNP type A/B protein
protein.
Length = 284
Score = 32.7 bits (71), Expect = 1.9
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +2
Query: 185 DPGKMFVGGLSWQTS 229
D GKMFVGGLSW TS
Sbjct: 66 DAGKMFVGGLSWDTS 80
>D86967-1|BAA13203.2| 666|Homo sapiens KIAA0212 protein.
Length = 666
Score = 31.5 bits (68), Expect = 4.4
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 44 ERLREPS-PTAXRSIVVVVPTGSHRVPAPSPMEXQNQDVARSPAEVPNDPGKMFVGGLSW 220
+RLR P P + S V P G V PS ++ A+SP + P PG G +W
Sbjct: 53 QRLRSPDGPASPTSGPVGRPGG---VSGPSWLQPPGTGAAQSPRKAPRRPGPGMCGPANW 109
Query: 221 QTSPGTLGGGRSR 259
G + GGR R
Sbjct: 110 ----GYVLGGRGR 118
>BC019088-1|AAH19088.1| 657|Homo sapiens ER degradation enhancer,
mannosidase alpha-like 1 protein.
Length = 657
Score = 31.5 bits (68), Expect = 4.4
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 44 ERLREPS-PTAXRSIVVVVPTGSHRVPAPSPMEXQNQDVARSPAEVPNDPGKMFVGGLSW 220
+RLR P P + S V P G V PS ++ A+SP + P PG G +W
Sbjct: 44 QRLRSPDGPASPTSGPVGRPGG---VSGPSWLQPPGTGAAQSPRKAPRRPGPGMCGPANW 100
Query: 221 QTSPGTLGGGRSR 259
G + GGR R
Sbjct: 101 ----GYVLGGRGR 109
>M23294-1|AAA52645.1| 556|Homo sapiens beta-hexosaminidase
beta-subunit protein.
Length = 556
Score = 31.1 bits (67), Expect = 5.8
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = -1
Query: 307 WASPTDARDALPPVK*ARPATAERTWTSLPAESSDEHLPRVVRHLC 170
W DA + P + A ER W+S D+ R+ RH C
Sbjct: 489 WGEYVDATNLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRC 534
>M19735-1|AAA68620.1| 544|Homo sapiens beta-hexosaminidase
beta-subunit protein.
Length = 544
Score = 31.1 bits (67), Expect = 5.8
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = -1
Query: 307 WASPTDARDALPPVK*ARPATAERTWTSLPAESSDEHLPRVVRHLC 170
W DA + P + A ER W+S D+ R+ RH C
Sbjct: 477 WGEYVDATNLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRC 522
>M13519-1|AAA51828.1| 572|Homo sapiens HEXB protein.
Length = 572
Score = 31.1 bits (67), Expect = 5.8
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = -1
Query: 307 WASPTDARDALPPVK*ARPATAERTWTSLPAESSDEHLPRVVRHLC 170
W DA + P + A ER W+S D+ R+ RH C
Sbjct: 505 WGEYVDATNLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRC 550
>D55671-1|BAA09522.1| 267|Homo sapiens heterogeneous nuclear
ribonucleoprotein D (hnRNP D) protein.
Length = 267
Score = 31.1 bits (67), Expect = 5.8
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +2
Query: 185 DPGKMFVGGLSWQTS 229
D GKMF+GGLSW T+
Sbjct: 7 DEGKMFIGGLSWDTT 21
>BT009919-1|AAP88921.1| 556|Homo sapiens hexosaminidase B (beta
polypeptide) protein.
Length = 556
Score = 31.1 bits (67), Expect = 5.8
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = -1
Query: 307 WASPTDARDALPPVK*ARPATAERTWTSLPAESSDEHLPRVVRHLC 170
W DA + P + A ER W+S D+ R+ RH C
Sbjct: 489 WGEYVDATNLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRC 534
>BC067820-1|AAH67820.1| 434|Homo sapiens INPP5F protein protein.
Length = 434
Score = 31.1 bits (67), Expect = 5.8
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = -2
Query: 213 SPPTNIFPGSLGTSAGLRATSWFWXSMGLGAGTRCEPVGTTTTIERXAVGDGSRXRSAAL 34
SPPT P + ++A R S+ G G+G + +G R A G+R + AL
Sbjct: 5 SPPTGRVPRGVPSAAASRRGSYPAAPRGAGSG-GLDRLGRPVRRPRAAASLGARGQHGAL 63
Query: 33 PTTG 22
P+ G
Sbjct: 64 PSQG 67
>BC017378-1|AAH17378.1| 556|Homo sapiens hexosaminidase B (beta
polypeptide) protein.
Length = 556
Score = 31.1 bits (67), Expect = 5.8
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = -1
Query: 307 WASPTDARDALPPVK*ARPATAERTWTSLPAESSDEHLPRVVRHLC 170
W DA + P + A ER W+S D+ R+ RH C
Sbjct: 489 WGEYVDATNLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRC 534
>AY643499-1|AAV48875.1| 331|Homo sapiens ENC-1AS protein.
Length = 331
Score = 31.1 bits (67), Expect = 5.8
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = -1
Query: 307 WASPTDARDALPPVK*ARPATAERTWTSLPAESSDEHLPRVVRHLC 170
W DA + P + A ER W+S D+ R+ RH C
Sbjct: 264 WGEYVDATNLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRC 309
>AF378118-1|AAM46114.1| 556|Homo sapiens cervical cancer
proto-oncogene 7 protein.
Length = 556
Score = 31.1 bits (67), Expect = 5.8
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = -1
Query: 307 WASPTDARDALPPVK*ARPATAERTWTSLPAESSDEHLPRVVRHLC 170
W DA + P + A ER W+S D+ R+ RH C
Sbjct: 489 WGEYVDATNLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRC 534
>AF026126-3|AAC23476.1| 336|Homo sapiens heterogeneous nuclear
ribonucleoprotein D protein.
Length = 336
Score = 31.1 bits (67), Expect = 5.8
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +2
Query: 185 DPGKMFVGGLSWQTS 229
D GKMF+GGLSW T+
Sbjct: 76 DEGKMFIGGLSWDTT 90
>AL137077-6|CAI11049.1| 296|Homo sapiens LSM14 homolog B (SCD6, S.
cerevisiae) protein.
Length = 296
Score = 30.7 bits (66), Expect = 7.7
Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Frame = -2
Query: 213 SPPTNIFP-GSLGTSAGLRATSWFWXSMGLGAGTRCEPVGTTTTIERXAVGDGSRXRSAA 37
SP + P G L S+ L + + S+GLGAG PVG + +E+ AV GS A
Sbjct: 141 SPFRGMAPYGPLAASSLL--SQQYAASLGLGAGFPSIPVGKSPMVEQ-AVQTGSADNLNA 197
Query: 36 ---LP---TTGTRLIGR 4
LP TTGT+L GR
Sbjct: 198 KKLLPGKGTTGTQLNGR 214
>AL137077-5|CAI11048.1| 223|Homo sapiens LSM14 homolog B (SCD6, S.
cerevisiae) protein.
Length = 223
Score = 30.7 bits (66), Expect = 7.7
Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Frame = -2
Query: 213 SPPTNIFP-GSLGTSAGLRATSWFWXSMGLGAGTRCEPVGTTTTIERXAVGDGSRXRSAA 37
SP + P G L S+ L + + S+GLGAG PVG + +E+ AV GS A
Sbjct: 115 SPFRGMAPYGPLAASSLL--SQQYAASLGLGAGFPSIPVGKSPMVEQ-AVQTGSADNLNA 171
Query: 36 ---LP---TTGTRLIGR 4
LP TTGT+L GR
Sbjct: 172 KKLLPGKGTTGTQLNGR 188
>AF118265-1|AAD21055.1| 502|Homo sapiens orphan G protein-coupled
receptor GPR44 protein.
Length = 502
Score = 30.7 bits (66), Expect = 7.7
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -2
Query: 255 DLPPPSVPGLVCQLSPPTNIFPGSLGTS-AGLRATSWFWXSMGL 127
DLP S G++ PP NIF G +G S AG + W GL
Sbjct: 18 DLPKHSNAGILFPPPPPPNIFVGHIGISWAGSHSGPLSWFPGGL 61
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,086,735
Number of Sequences: 237096
Number of extensions: 2329256
Number of successful extensions: 10141
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 9529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10102
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11825849886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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