Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_A09
(913 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY122226-1|AAM52738.1| 369|Drosophila melanogaster RE25373p pro... 55 1e-07
AE014296-2876|AAF49366.3| 369|Drosophila melanogaster CG32169-P... 55 1e-07
X79340-1|CAA55898.2| 213|Drosophila melanogaster musashi protein. 35 0.18
X79339-1|CAA55897.1| 606|Drosophila melanogaster musashi protein. 35 0.18
AY119171-1|AAM51031.1| 634|Drosophila melanogaster RH49436p pro... 35 0.18
AY051802-1|AAK93226.1| 606|Drosophila melanogaster LD31631p pro... 35 0.18
AE014297-3816|AAF56478.2| 606|Drosophila melanogaster CG5099-PA... 35 0.18
AE014297-3812|AAN14056.2| 634|Drosophila melanogaster CG5099-PB... 35 0.18
X62639-1|CAA44505.1| 385|Drosophila melanogaster hrp48.1 protein. 31 2.9
DQ062784-1|AAY56657.1| 421|Drosophila melanogaster heterogeneou... 31 2.9
AY128430-1|AAM75023.1| 421|Drosophila melanogaster GH26816p pro... 31 2.9
AY069699-1|AAL39844.1| 421|Drosophila melanogaster LD46853p pro... 31 2.9
AE014134-1193|AAN10605.1| 421|Drosophila melanogaster CG10377-P... 31 2.9
AE014134-1192|AAF52457.1| 421|Drosophila melanogaster CG10377-P... 31 2.9
AE014134-1191|AAF52456.1| 421|Drosophila melanogaster CG10377-P... 31 2.9
S51715-1|AAB24627.1| 44|Drosophila melanogaster RNA recognitio... 30 3.8
AE014134-1157|AAF52432.1| 992|Drosophila melanogaster CG11323-P... 29 6.7
AE014297-2746|AAN13818.1| 130|Drosophila melanogaster CG31210-P... 29 8.8
AE014296-2923|AAF49329.1| 680|Drosophila melanogaster CG6311-PB... 29 8.8
AE014134-2919|AAF53661.1| 446|Drosophila melanogaster CG15157-P... 29 8.8
>AY122226-1|AAM52738.1| 369|Drosophila melanogaster RE25373p
protein.
Length = 369
Score = 55.2 bits (127), Expect = 1e-07
Identities = 22/26 (84%), Positives = 25/26 (96%)
Frame = +2
Query: 164 SPAEVPNDPGKMFVGGLSWQTSPGTL 241
SP+EVPNDPGKMF+GGLSWQTSP +L
Sbjct: 20 SPSEVPNDPGKMFIGGLSWQTSPESL 45
>AE014296-2876|AAF49366.3| 369|Drosophila melanogaster CG32169-PA
protein.
Length = 369
Score = 55.2 bits (127), Expect = 1e-07
Identities = 22/26 (84%), Positives = 25/26 (96%)
Frame = +2
Query: 164 SPAEVPNDPGKMFVGGLSWQTSPGTL 241
SP+EVPNDPGKMF+GGLSWQTSP +L
Sbjct: 20 SPSEVPNDPGKMFIGGLSWQTSPESL 45
>X79340-1|CAA55898.2| 213|Drosophila melanogaster musashi protein.
Length = 213
Score = 34.7 bits (76), Expect = 0.18
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +2
Query: 188 PGKMFVGGLSWQTSPGTL 241
PGK+FVGGLSWQTS L
Sbjct: 174 PGKLFVGGLSWQTSSDKL 191
>X79339-1|CAA55897.1| 606|Drosophila melanogaster musashi protein.
Length = 606
Score = 34.7 bits (76), Expect = 0.18
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +2
Query: 188 PGKMFVGGLSWQTSPGTL 241
PGK+FVGGLSWQTS L
Sbjct: 174 PGKLFVGGLSWQTSSDKL 191
>AY119171-1|AAM51031.1| 634|Drosophila melanogaster RH49436p
protein.
Length = 634
Score = 34.7 bits (76), Expect = 0.18
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +2
Query: 188 PGKMFVGGLSWQTSPGTL 241
PGK+FVGGLSWQTS L
Sbjct: 202 PGKLFVGGLSWQTSSDKL 219
>AY051802-1|AAK93226.1| 606|Drosophila melanogaster LD31631p
protein.
Length = 606
Score = 34.7 bits (76), Expect = 0.18
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +2
Query: 188 PGKMFVGGLSWQTSPGTL 241
PGK+FVGGLSWQTS L
Sbjct: 174 PGKLFVGGLSWQTSSDKL 191
>AE014297-3816|AAF56478.2| 606|Drosophila melanogaster CG5099-PA,
isoform A protein.
Length = 606
Score = 34.7 bits (76), Expect = 0.18
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +2
Query: 188 PGKMFVGGLSWQTSPGTL 241
PGK+FVGGLSWQTS L
Sbjct: 174 PGKLFVGGLSWQTSSDKL 191
>AE014297-3812|AAN14056.2| 634|Drosophila melanogaster CG5099-PB,
isoform B protein.
Length = 634
Score = 34.7 bits (76), Expect = 0.18
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +2
Query: 188 PGKMFVGGLSWQTSPGTL 241
PGK+FVGGLSWQTS L
Sbjct: 202 PGKLFVGGLSWQTSSDKL 219
>X62639-1|CAA44505.1| 385|Drosophila melanogaster hrp48.1 protein.
Length = 385
Score = 30.7 bits (66), Expect = 2.9
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 182 NDPGKMFVGGLSWQTSPGTLGGGRSRSFHRW-KCITCV 292
++ GK+FVGGLSW+T+ L SR F R+ I CV
Sbjct: 4 DERGKLFVGGLSWETTQENL----SRYFCRFGDIIDCV 37
>DQ062784-1|AAY56657.1| 421|Drosophila melanogaster heterogeneous
nuclear ribonucleoproteinprotein.
Length = 421
Score = 30.7 bits (66), Expect = 2.9
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 182 NDPGKMFVGGLSWQTSPGTLGGGRSRSFHRW-KCITCV 292
++ GK+FVGGLSW+T+ L SR F R+ I CV
Sbjct: 4 DERGKLFVGGLSWETTQENL----SRYFCRFGDIIDCV 37
>AY128430-1|AAM75023.1| 421|Drosophila melanogaster GH26816p
protein.
Length = 421
Score = 30.7 bits (66), Expect = 2.9
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 182 NDPGKMFVGGLSWQTSPGTLGGGRSRSFHRW-KCITCV 292
++ GK+FVGGLSW+T+ L SR F R+ I CV
Sbjct: 4 DERGKLFVGGLSWETTQENL----SRYFCRFGDIIDCV 37
>AY069699-1|AAL39844.1| 421|Drosophila melanogaster LD46853p
protein.
Length = 421
Score = 30.7 bits (66), Expect = 2.9
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 182 NDPGKMFVGGLSWQTSPGTLGGGRSRSFHRW-KCITCV 292
++ GK+FVGGLSW+T+ L SR F R+ I CV
Sbjct: 4 DERGKLFVGGLSWETTQENL----SRYFCRFGDIIDCV 37
>AE014134-1193|AAN10605.1| 421|Drosophila melanogaster CG10377-PC,
isoform C protein.
Length = 421
Score = 30.7 bits (66), Expect = 2.9
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 182 NDPGKMFVGGLSWQTSPGTLGGGRSRSFHRW-KCITCV 292
++ GK+FVGGLSW+T+ L SR F R+ I CV
Sbjct: 4 DERGKLFVGGLSWETTQENL----SRYFCRFGDIIDCV 37
>AE014134-1192|AAF52457.1| 421|Drosophila melanogaster CG10377-PB,
isoform B protein.
Length = 421
Score = 30.7 bits (66), Expect = 2.9
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 182 NDPGKMFVGGLSWQTSPGTLGGGRSRSFHRW-KCITCV 292
++ GK+FVGGLSW+T+ L SR F R+ I CV
Sbjct: 4 DERGKLFVGGLSWETTQENL----SRYFCRFGDIIDCV 37
>AE014134-1191|AAF52456.1| 421|Drosophila melanogaster CG10377-PA,
isoform A protein.
Length = 421
Score = 30.7 bits (66), Expect = 2.9
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 182 NDPGKMFVGGLSWQTSPGTLGGGRSRSFHRW-KCITCV 292
++ GK+FVGGLSW+T+ L SR F R+ I CV
Sbjct: 4 DERGKLFVGGLSWETTQENL----SRYFCRFGDIIDCV 37
>S51715-1|AAB24627.1| 44|Drosophila melanogaster RNA recognition
motif-type RNA-binding protein protein.
Length = 44
Score = 30.3 bits (65), Expect = 3.8
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +2
Query: 200 FVGGLSWQTSPGTL 241
FVGGLSWQTSP +L
Sbjct: 1 FVGGLSWQTSPESL 14
>AE014134-1157|AAF52432.1| 992|Drosophila melanogaster CG11323-PA
protein.
Length = 992
Score = 29.5 bits (63), Expect = 6.7
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -1
Query: 271 PVK*ARPATAERTWTSLPAESSDEHLP 191
PVK ARPAT + T S+P S+ E+ P
Sbjct: 72 PVKLARPATPKETAISVPDHSNKENQP 98
>AE014297-2746|AAN13818.1| 130|Drosophila melanogaster CG31210-PA
protein.
Length = 130
Score = 29.1 bits (62), Expect = 8.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 620 CARIRHGRLRTSDFCIISIKYRFLPQIQNIFLFSNVKKRNFH 495
C HG L + +CI+ + ++ LPQI +I + +RN H
Sbjct: 57 CVHTDHGILWS--YCILVLAFQSLPQIGHIHFEGQLHRRNGH 96
>AE014296-2923|AAF49329.1| 680|Drosophila melanogaster CG6311-PB
protein.
Length = 680
Score = 29.1 bits (62), Expect = 8.8
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 137 EXQNQDVARSPAEVPNDPGKMFVGGLSWQTSP-GTLGGGRSRSFHRWKCI 283
+ + QD+ +P ND G++ GG S + P G S H+ K I
Sbjct: 128 QEREQDLPSTPRSRANDNGRVAAGGASSSSGPRGNFNSALSDKMHQLKLI 177
>AE014134-2919|AAF53661.1| 446|Drosophila melanogaster CG15157-PA
protein.
Length = 446
Score = 29.1 bits (62), Expect = 8.8
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = +2
Query: 98 PTGSHRVPAPSPMEXQNQDVARSPAEVPNDPGKMFVGGLSWQTSPGTLGGGRSRSFH 268
PT ++ P P P +D SP +DP F+ G + + T+G + H
Sbjct: 154 PTTTNPPPPPPPFAAHEEDEIFSPHSKKSDPSLCFLPGGNTSSKYNTIGPSSDYARH 210
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,029,417
Number of Sequences: 53049
Number of extensions: 744733
Number of successful extensions: 2439
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2435
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4464466254
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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