Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_A09
         (913 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35601-1|CAA84667.2|  320|Caenorhabditis elegans Hypothetical pr...    37   0.023
AB036738-1|BAB13470.1|  320|Caenorhabditis elegans neural RNA-bi...    37   0.023
Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    31   1.5  
AF016670-4|AAB66105.2|  232|Caenorhabditis elegans Hypothetical ...    30   2.0  
AF016670-3|AAB66106.1|  232|Caenorhabditis elegans Hypothetical ...    30   2.0  
DQ178246-1|ABA18185.1|  482|Caenorhabditis elegans TPX2-related ...    28   8.1  
DQ178245-1|ABA18184.1|  507|Caenorhabditis elegans TPX2-related ...    28   8.1  
AC025716-4|AAL32238.1|  482|Caenorhabditis elegans Tpx2 (targeti...    28   8.1  
AC025716-2|AAK39617.1|  507|Caenorhabditis elegans Tpx2 (targeti...    28   8.1  

>Z35601-1|CAA84667.2|  320|Caenorhabditis elegans Hypothetical
           protein R10E9.1 protein.
          Length = 320

 Score = 36.7 bits (81), Expect = 0.023
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = +2

Query: 185 DPGKMFVGGLSWQTSPGTL 241
           DPGKMF+GGLSWQT+   L
Sbjct: 43  DPGKMFIGGLSWQTTAENL 61


>AB036738-1|BAB13470.1|  320|Caenorhabditis elegans neural
           RNA-binding protein MSI-1 protein.
          Length = 320

 Score = 36.7 bits (81), Expect = 0.023
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = +2

Query: 185 DPGKMFVGGLSWQTSPGTL 241
           DPGKMF+GGLSWQT+   L
Sbjct: 43  DPGKMFIGGLSWQTTAENL 61


>Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical
           protein ZC518.2 protein.
          Length = 984

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 23  PVVGSAAERLREPSPTAXRSIVVVVPTGSHRVPAPSPMEXQNQDVARSP 169
           P VGSAA  ++ P P+A  S        +   PAP+P     Q +A  P
Sbjct: 139 PSVGSAAPSIQPPIPSALASARPAPFPAAQPPPAPTPTPSYQQQMAPRP 187


>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
           protein C46C2.1b protein.
          Length = 1677

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 8   PMSLVPVVGSAAERLREPSPT-AXRSIVVVVPTGSHRVPAPSPMEXQNQDVARSPAEVPN 184
           P++++  + + +    +P P  +  S  V VPT    VP PS +  QN     +P    N
Sbjct: 791 PVTMIANIPAMSPTSAQPQPVLSPTSAAVPVPTTMIHVPKPSEIPVQNVATTAAPVAANN 850

Query: 185 DP 190
            P
Sbjct: 851 VP 852


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
           protein C46C2.1a protein.
          Length = 1838

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 8   PMSLVPVVGSAAERLREPSPT-AXRSIVVVVPTGSHRVPAPSPMEXQNQDVARSPAEVPN 184
           P++++  + + +    +P P  +  S  V VPT    VP PS +  QN     +P    N
Sbjct: 791 PVTMIANIPAMSPTSAQPQPVLSPTSAAVPVPTTMIHVPKPSEIPVQNVATTAAPVAANN 850

Query: 185 DP 190
            P
Sbjct: 851 VP 852


>AF016670-4|AAB66105.2|  232|Caenorhabditis elegans Hypothetical
           protein K02F6.5 protein.
          Length = 232

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 528 KYILNLR*KPIFYGYNTEVRCAKAAMPDARASSVATFRPFAPQAV 662
           K++  L  + IFYG    + C K AM  +   +VA   P +P  V
Sbjct: 69  KHLRQLLREAIFYGLEKLIECCKQAMATSEIVAVAPEEPKSPDTV 113


>AF016670-3|AAB66106.1|  232|Caenorhabditis elegans Hypothetical
           protein K02F6.8 protein.
          Length = 232

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 528 KYILNLR*KPIFYGYNTEVRCAKAAMPDARASSVATFRPFAPQAV 662
           K++  L  + IFYG    + C K AM  +   +VA   P +P  V
Sbjct: 69  KHLRQLLREAIFYGLEKLIECCKQAMATSEIVAVAPEEPKSPDTV 113


>DQ178246-1|ABA18185.1|  482|Caenorhabditis elegans TPX2-related
           alternative variant b protein.
          Length = 482

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 59  PSPTAXRSIVVVVPTGSHRVPAPSPMEXQNQDVARSPA 172
           P  TA RS ++ +      VPAP+P + Q    A  PA
Sbjct: 329 PIATANRSSILRMNVVKPTVPAPAPADAQQNKAASRPA 366


>DQ178245-1|ABA18184.1|  507|Caenorhabditis elegans TPX2-related
           alternative variant a protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 59  PSPTAXRSIVVVVPTGSHRVPAPSPMEXQNQDVARSPA 172
           P  TA RS ++ +      VPAP+P + Q    A  PA
Sbjct: 329 PIATANRSSILRMNVVKPTVPAPAPADAQQNKAASRPA 366


>AC025716-4|AAL32238.1|  482|Caenorhabditis elegans Tpx2 (targeting
           protein for xenopusklp2)-like protein 1, isoform b
           protein.
          Length = 482

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 59  PSPTAXRSIVVVVPTGSHRVPAPSPMEXQNQDVARSPA 172
           P  TA RS ++ +      VPAP+P + Q    A  PA
Sbjct: 329 PIATANRSSILRMNVVKPTVPAPAPADAQQNKAASRPA 366


>AC025716-2|AAK39617.1|  507|Caenorhabditis elegans Tpx2 (targeting
           protein for xenopusklp2)-like protein 1, isoform a
           protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 59  PSPTAXRSIVVVVPTGSHRVPAPSPMEXQNQDVARSPA 172
           P  TA RS ++ +      VPAP+P + Q    A  PA
Sbjct: 329 PIATANRSSILRMNVVKPTVPAPAPADAQQNKAASRPA 366


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,173,483
Number of Sequences: 27780
Number of extensions: 366406
Number of successful extensions: 962
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)