Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_A05
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    27   3.4  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   4.5  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    26   6.0  

>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 300 SNPNKTALYLYAAFEILF*LCSSILCT*FSL 208
           SNPNK ++Y+Y  F     LCS  L    SL
Sbjct: 72  SNPNKFSIYIYIYFFFYSFLCSPYLFKYISL 102


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 261 MLHTNTMLSY*DYYGPPNNLNSTAITVTS 347
           ++HTNT +S       P N N+T +++T+
Sbjct: 95  LIHTNTSISKPSQTATPQNTNTTQVSLTN 123


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/59 (22%), Positives = 27/59 (45%)
 Frame = -2

Query: 546  NSVHFSPVFDFFLC*KGERFIHFERKPEIFLVFISFSVTNQKTVFLPPSHEKKKTITKQ 370
            N++H + +    +   G      E  PE+FL+FI+ +V     +    S  +K  + ++
Sbjct: 1170 NAIHSNSLAHLVIVIDGSTLADIENDPELFLLFINTAVEADSVICCRSSPMQKALMVQK 1228


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 10  DXLHTNGSTSSLRWSVLPCSSLAVPLLLTXSNI 108
           D L   G   + RW   P  SLAV LLL  S +
Sbjct: 352 DALENAGGFWTERWGDAPVHSLAVGLLLNRSQV 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,207,003
Number of Sequences: 5004
Number of extensions: 63640
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)