Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_A03
(709 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 40 3e-04
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 37 0.003
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 36 0.004
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 36 0.006
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 34 0.017
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 34 0.017
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 33 0.030
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.12
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 31 0.12
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 31 0.16
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 31 0.21
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 31 0.21
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 31 0.21
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 30 0.28
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 30 0.37
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 29 0.49
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 29 0.86
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.86
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 28 1.1
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 28 1.5
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 2.0
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.0
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 2.0
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 27 2.6
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 27 3.5
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 27 3.5
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce... 27 3.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 4.6
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 26 4.6
SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.1
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 26 6.1
SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone... 26 6.1
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 26 6.1
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 25 8.0
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 8.0
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 25 8.0
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 25 8.0
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 39.9 bits (89), Expect = 3e-04
Identities = 25/140 (17%), Positives = 63/140 (45%)
Frame = +3
Query: 162 KDANLRAEKAEEEARQLQKKIQTIENELDQTQESLMQVNGKLEEKEKALQNAESEVAALN 341
KD+ + EEE +L++ +TI ++L + L + + + ++ ++ +++ +
Sbjct: 360 KDSRTSNSQLEEEMVELKESNRTIHSQLTDAESKLSSFEQENKSLKGSIDEYQNNLSSKD 419
Query: 342 RRIQXXXXXXXXXXXXXATATAKLSEASQAADESERARKVLENRSLADEERMDALENQLK 521
+ ++ A AT KL+E + D + K E +++ N+LK
Sbjct: 420 KMVKQVSSQLEEARSSLAHATGKLAEINSERDFQNKKIKDFEKIEQDLRACLNSSSNELK 479
Query: 522 EARFLAEEADKKYDEVARKL 581
E L ++ D++ + + ++
Sbjct: 480 EKSALIDKKDQELNNLREQI 499
Score = 38.7 bits (86), Expect = 8e-04
Identities = 28/142 (19%), Positives = 60/142 (42%)
Frame = +3
Query: 156 QAKDANLRAEKAEEEARQLQKKIQTIENELDQTQESLMQVNGKLEEKEKALQNAESEVAA 335
Q DA + E+E + L+ I +N L + + QV+ +LEE +L +A ++A
Sbjct: 386 QLTDAESKLSSFEQENKSLKGSIDEYQNNLSSKDKMVKQVSSQLEEARSSLAHATGKLAE 445
Query: 336 LNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESERARKVLENRSLADEERMDALENQ 515
+N A L+ +S +E + +++ + ++ ++ L Q
Sbjct: 446 INSERDFQNKKIKDFEKIEQDLRACLNSSS---NELKEKSALIDKK----DQELNNLREQ 498
Query: 516 LKEARFLAEEADKKYDEVARKL 581
+KE + ++E + R +
Sbjct: 499 IKEQKKVSESTQSSLQSLQRDI 520
Score = 29.1 bits (62), Expect = 0.65
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Frame = +3
Query: 111 LDXDNALDRAAMCEQQAKDANLRAEK---AEEEARQLQKKIQTIENELDQTQ-------E 260
L+ +N + + KD N + +EE+ QKK+ +E+ Q
Sbjct: 149 LEHENGILSLQLSSSNKKDKNTSSVTTLTSEEDVSYFQKKLTNMESNFSAKQSEAYDLSR 208
Query: 261 SLMQVNGKLEEKEKALQNAESEVAAL 338
L+ V KL++KEK + + +V+++
Sbjct: 209 QLLTVTEKLDKKEKDYEKIKEDVSSI 234
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 36.7 bits (81), Expect = 0.003
Identities = 30/155 (19%), Positives = 63/155 (40%), Gaps = 4/155 (2%)
Frame = +3
Query: 141 AMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQT----QESLMQVNGKLEEKEKAL 308
A EQQ + E++ Q +++T+ENEL Q QE + Q + +E + +
Sbjct: 415 AELEQQLLATRGQLEQSNVLLNQYDARVRTLENELSQAGVNLQEQIHQNDDLIESLKNQI 474
Query: 309 QNAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESERARKVLENRSLADE 488
+++ AL + K S A +A D+ E+ + ++N++L
Sbjct: 475 LTWKNKYEALAKLYTQLRQEHLDLLSKYKQIQLKASSAQEAIDKKEKMEREMKNKNLELA 534
Query: 489 ERMDALENQLKEARFLAEEADKKYDEVARKLAMVE 593
+ + + E + K + R+L +++
Sbjct: 535 DMILERDRARHELETMHRSQRDKQESTERELRLLQ 569
Score = 30.7 bits (66), Expect = 0.21
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +3
Query: 96 LQAXKLDXDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQESLMQV 275
+Q A+D+ E++ K+ NL E + + +++T+ QES +
Sbjct: 505 IQLKASSAQEAIDKKEKMEREMKNKNLELADMILERDRARHELETMHRSQRDKQESTERE 564
Query: 276 NGKLEEKEKALQ-NAESEVAALNRR 347
L+EK +L+ N SEV+ L R
Sbjct: 565 LRLLQEKAASLERNKSSEVSNLLSR 589
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 36.3 bits (80), Expect = 0.004
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
Frame = +3
Query: 183 EKAEEEARQLQKKIQTIENELDQTQESLMQVNGKLEEKEKALQNAESEVAALNRRIQXXX 362
EKAE EA++ ++ +E E + +E+ Q + EEK K E+E A +
Sbjct: 539 EKAEAEAKRKAEEKARLEAEENAKREAEEQAKREAEEKAK----REAEEKAKREAEEKAK 594
Query: 363 XXXXXXXXXXATATAKLSEASQAADES-ERARKVLENRSLADEERMDALENQLKEARFLA 539
A AK +A E+ E+A++ E ++ + E E + K R
Sbjct: 595 REAEENAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAE 654
Query: 540 EEADKKYDEVARKLAMVEA 596
E+A ++ +E A++ A +A
Sbjct: 655 EKAKREAEENAKREAEEKA 673
Score = 31.9 bits (69), Expect = 0.092
Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 2/163 (1%)
Frame = +3
Query: 102 AXKLDXDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQESLMQVNG 281
A KL + A E + K +AEE A++ ++ E E +E+ +
Sbjct: 528 AIKLAIQQRIQEKAEAEAKRKAEEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKR 587
Query: 282 KLEEKEK--ALQNAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESERAR 455
+ EEK K A +NA+ E +R A A+ +A ++++R
Sbjct: 588 EAEEKAKREAEENAKREAEEKAKR--EAEEKAKREAEEKAKREAEEKAKREAEEKAKREA 645
Query: 456 KVLENRSLADEERMDALENQLKEARFLAEEADKKYDEVARKLA 584
+ R ++ + +A EN +EA E+A ++ +E A++ A
Sbjct: 646 EEKAKREAEEKAKREAEENAKREAE---EKAKREAEENAKREA 685
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 35.9 bits (79), Expect = 0.006
Identities = 32/155 (20%), Positives = 67/155 (43%), Gaps = 7/155 (4%)
Frame = +3
Query: 132 DRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQESLMQ-------VNGKLE 290
++ ++ + +D + + E E RQLQ ++ + ELD Q+ L + + ++E
Sbjct: 264 EKDSLSTEMEEDKSNKEVDYEYEIRQLQNRLDELSEELDVAQDLLTEKEDEIATLKRQIE 323
Query: 291 EKEKALQNAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESERARKVLEN 470
EKE + E+E + +Q A L+ + E++ + +
Sbjct: 324 EKENSSSAFENEENSSYVHLQEDYAILQAKCDEFADRIQVLTADLEKEKENQIMHESEAS 383
Query: 471 RSLADEERMDALENQLKEARFLAEEADKKYDEVAR 575
L D ++ L+ QL +A EE + +D+++R
Sbjct: 384 IGLTDSMQVHTLQEQLHKAN---EEIEFLHDQISR 415
Score = 31.1 bits (67), Expect = 0.16
Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 15/155 (9%)
Frame = +3
Query: 162 KDANLRAEKAEEEARQLQKKIQTIENE----------LDQTQESLMQVNGKLEEKEK--- 302
+D L+ EEE L+ K+QT+E++ L ESL N +++E++
Sbjct: 424 EDIMLQFRSLEEERDVLESKLQTLEDDNNSLRLMTSSLGNQIESLRTQNREIDEEKNHLR 483
Query: 303 --ALQNAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESERARKVLENRS 476
A +N++ +A N R+Q + L+E +E+E +++ +
Sbjct: 484 LLASKNSDKALAETNIRLQEVTKELETLRMKNSN---DLNEIHDLREENEGLTLKIDSIT 540
Query: 477 LADEERMDALENQLKEARFLAEEADKKYDEVARKL 581
+ ++ LE ++K E + DE KL
Sbjct: 541 KEKDRLINELEQRIKSYEVNVSELNGTIDEYRNKL 575
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 34.3 bits (75), Expect = 0.017
Identities = 33/170 (19%), Positives = 65/170 (38%), Gaps = 7/170 (4%)
Frame = +3
Query: 210 LQKKIQTIENELDQTQESLMQVNGKLEEKEKALQNAESEVAALNRRIQXXXXXXXXXXXX 389
L+ K + +EN+L+ E L + N E + ++ AE ALN +
Sbjct: 748 LESKNKKLENDLNLLTEKLNKKNADTESFKNTIREAELSKKALNDNLGNKENIISDLKNK 807
Query: 390 XATATAKLSEASQAADESERARKVLENRSLADEERMDALE----NQLKEARFLAEEADKK 557
+ + +L E ++ + + L R A + + ++E NQ E + ++
Sbjct: 808 LSEESTRLQELQSQLNQDKNQIETLNERISAAADELSSMESINKNQANELKLAKQKCSNL 867
Query: 558 YDEV--ARKLAMVEADLXXXXXXXXXXXXKIVE-LEEELRVVGNNLKSLE 698
+++ KLA + K L +EL+ V + SL+
Sbjct: 868 QEKINFGNKLAKEHTEKISSLEKDLEAATKTASTLSKELKTVKSENDSLK 917
Score = 29.9 bits (64), Expect = 0.37
Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 1/142 (0%)
Frame = +3
Query: 180 AEKAEEEARQLQKKIQTIENELDQTQESLMQVNGKLEEKEKALQNAESEVAALNRRIQXX 359
AEK EE Q+K+ + ELD T+ + Q+ EE + + ESE+
Sbjct: 654 AEKYHEELLDNQQKLYDLRIELDYTKSNCKQME---EEMQVLREGHESEIKDFIEEHSKL 710
Query: 360 XXXXXXXXXXXATATAKLSEASQAADESERARKVLENRSLADEERMDALENQLKEARFLA 539
++K + ++S K L N A E + LEN L L
Sbjct: 711 TKQLDDIKNQFGIISSKNRDLLSELEKS----KSLNNSLAALESKNKKLENDL---NLLT 763
Query: 540 EEADKK-YDEVARKLAMVEADL 602
E+ +KK D + K + EA+L
Sbjct: 764 EKLNKKNADTESFKNTIREAEL 785
Score = 28.7 bits (61), Expect = 0.86
Identities = 34/197 (17%), Positives = 77/197 (39%), Gaps = 17/197 (8%)
Frame = +3
Query: 147 CEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQESLMQVNGKLE------EKEKAL 308
C+Q ++ + E E E + ++ + +LD + ++ K EK K+L
Sbjct: 682 CKQMEEEMQVLREGHESEIKDFIEEHSKLTKQLDDIKNQFGIISSKNRDLLSELEKSKSL 741
Query: 309 QNAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESERAR----------- 455
N+ + + + N++++ T + A+ S++A
Sbjct: 742 NNSLAALESKNKKLENDLNLLTEKLNKKNADTESFKNTIREAELSKKALNDNLGNKENII 801
Query: 456 KVLENRSLADEERMDALENQLKEARFLAEEADKKYDEVARKLAMVEADLXXXXXXXXXXX 635
L+N+ + R+ L++QL + + E +++ A +L+ +E+
Sbjct: 802 SDLKNKLSEESTRLQELQSQLNQDKNQIETLNERISAAADELSSMESINKNQANELKLAK 861
Query: 636 XKIVELEEELRVVGNNL 686
K L+E++ GN L
Sbjct: 862 QKCSNLQEKIN-FGNKL 877
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 34.3 bits (75), Expect = 0.017
Identities = 47/192 (24%), Positives = 89/192 (46%), Gaps = 23/192 (11%)
Frame = +3
Query: 60 NKTTKMDAXNHXLQAXKLDXDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIEN 239
+K + +A +++ K D ++ L +A + + + + E+ + E + +K++ +N
Sbjct: 1448 SKNAENEAMQKEIESLK-DSNHQLQESASSDAE-QITKEQFEQLKSEKERTEKELADSKN 1505
Query: 240 ELDQTQESLMQVNGKLE----EKE------------KALQNAESEVAALNRRIQXXXXXX 371
EL+ Q + +GK E EKE + +QN +E+AAL R
Sbjct: 1506 ELEHLQSEAVDADGKTEISNLEKEIHELRSDKEGLVQQVQNLSAELAAL--REHSPTQGS 1563
Query: 372 XXXXXXXATATAKLSEASQAADESERARKVLENRS--LADEER-MDALENQLKE----AR 530
A ++L E+++ E E+ ++L RS +A++E+ + LENQL E +
Sbjct: 1564 LENADEIARLRSQL-ESTKQYYEKEKETEILAARSELVAEKEKTKEELENQLNEKSQRIK 1622
Query: 531 FLAEEADKKYDE 566
L E+A K E
Sbjct: 1623 ELEEQAQKNSSE 1634
Score = 33.5 bits (73), Expect = 0.030
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 5/153 (3%)
Frame = +3
Query: 120 DNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQESLMQ----VNGKL 287
DN A E + LR AE E +Q+K E L+ E+ Q V ++
Sbjct: 941 DNVEVEAISIELERTKEKLRM--AELEKSNIQQKYLASEKTLEMMNETHEQFKHLVESEI 998
Query: 288 EEKEKALQNAESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESERARKVLE 467
+E+ + + SE+ LN+R++ A +L +A + D + +K E
Sbjct: 999 STREEKITSLRSELLDLNKRVEVLKEEKESSSKELA---KQLEDAVREKDSALSFKKDYE 1055
Query: 468 N-RSLADEERMDALENQLKEARFLAEEADKKYD 563
RS AD + +L+ +++ R L +E Y+
Sbjct: 1056 KIRSDADRV-ITSLKEDIEKERSLMKECHSNYE 1087
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/66 (21%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 408 KLSEASQAADESERARKVLENRSLADEE-RMDALENQLKEARFLAEEADKKYDEVARKLA 584
KL + + A S+ ++E S R++ L N+L+ + ++ +KK++E L
Sbjct: 642 KLLDMAPATPNSKLNTNLIEQTSYQRSLIRLEQLTNELESLKSISRNKEKKFEEAISSLQ 701
Query: 585 MVEADL 602
+ ++++
Sbjct: 702 LEKSNI 707
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +3
Query: 123 NALDRAAMCEQQAKDAN--LRAEKAEEEARQLQKKIQTIENELDQTQES 263
++L R A +Q+ + N L ++ AE EA +QK+I+++++ Q QES
Sbjct: 1427 SSLTRFAHLKQELTNKNKELTSKNAENEA--MQKEIESLKDSNHQLQES 1473
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +3
Query: 114 DXDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQESLM 269
D A R E KD + E+E + L +++Q + +ELD + ++
Sbjct: 474 DCQKAKSRYEQLETLFKDKCTENKHYEQETKDLARQVQVLLHELDLCENGIV 525
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +3
Query: 150 EQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQESLMQ 272
EQQ +++ + ++ E L+ + + +ENEL Q +E L +
Sbjct: 63 EQQLRNSEKKLLQSNERYDLLEDERKLLENELSQIKEYLRE 103
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 33.5 bits (73), Expect = 0.030
Identities = 19/74 (25%), Positives = 39/74 (52%)
Frame = +3
Query: 120 DNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQESLMQVNGKLEEKE 299
D+ A E+ + A+ E+ +EE R+L++KI++ + L+ Q S + ++E+K+
Sbjct: 584 DDQQTTEAPFEEPDEPAHEPTEEEQEEMRKLEEKIESTKYGLETIQTSGKTIKQRIEQKK 643
Query: 300 KALQNAESEVAALN 341
L E+ L+
Sbjct: 644 TRLMILREELQELD 657
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 31.5 bits (68), Expect = 0.12
Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 7/143 (4%)
Frame = +3
Query: 186 KAEEEARQLQKKIQTIENELDQTQESLMQVNGKLEEKEKALQN----AESEVAALNRRIQ 353
K E + Q K+ ENE+++ + + L+++EK L+N E +LN R
Sbjct: 200 KREAALEEFQSKLLIRENEINKRELKMNGKEDDLKKREKDLENRLLKVEEHEKSLNERAT 259
Query: 354 XXXXXXXXXXXXXATATAKLSEASQAADESERARKVLENRSLADEERMDALENQLKE--- 524
+ A + E N++ +E +++LE ++ +
Sbjct: 260 KLSEANENFNNRFKEFEEREKSAIKQNKEQSSEGSKTANQTHEQKELINSLEKKVSDIAL 319
Query: 525 ARFLAEEADKKYDEVARKLAMVE 593
+ L EEA ++Y KLAMVE
Sbjct: 320 EKQLLEEAVERY-----KLAMVE 337
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 31.5 bits (68), Expect = 0.12
Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 15/190 (7%)
Frame = +3
Query: 69 TKMDAXNHXLQAXKLDXDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENE-- 242
TK + L+ KL D + A+ ++ L ++ E +A QL +Q +NE
Sbjct: 172 TKEECEKSWLEQQKLYKDMEQENASTIQK------LTSKIRELQASQLDHDLQASQNESA 225
Query: 243 -LDQTQESLMQVNG---KLEEKEKALQNAESEVAAL--NRRIQXXXXXXXXXXXXXATAT 404
LD +S +VN +L++ K + ++E+A L N + Q
Sbjct: 226 GLDVNAKSA-EVNAILSELDDANKIIVELQAEIAVLKQNTKEQKSGSSQDDLSNQQKQQL 284
Query: 405 AKLSEASQA-ADESERARKVLENRSLADEERMDALENQLKEARFLAEE----ADK--KYD 563
+ ++ + E E ++ + LEN++KEAR + EE A+K YD
Sbjct: 285 DFMDSLNKKLSTELESIKEASRKEMETHCATIQTLENEVKEARKVKEESLTLANKFSDYD 344
Query: 564 EVARKLAMVE 593
E+ R+L++++
Sbjct: 345 EIKRELSVLK 354
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 31.1 bits (67), Expect = 0.16
Identities = 25/160 (15%), Positives = 64/160 (40%), Gaps = 10/160 (6%)
Frame = +3
Query: 120 DNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQESLMQVNGKLEEKE 299
D ++ + +A RAE AE + ++++ ++ E E + +LEE E
Sbjct: 2 DKLREKINAARAETDEAVARAEAAEAKLKEVELQLSLKEQEYESLSRKSEAAESQLEELE 61
Query: 300 KALQN----------AESEVAALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESER 449
+ + ++E L+R+++ T K+ + A+ ER
Sbjct: 62 EETKQLRLKADNEDIQKTEAEQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFER 121
Query: 450 ARKVLENRSLADEERMDALENQLKEARFLAEEADKKYDEV 569
+ LE E++++ + ++ + + +E + +++
Sbjct: 122 RVQSLERERDDMEQKLEEMTDKYTKVKAELDEVHQALEDL 161
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 30.7 bits (66), Expect = 0.21
Identities = 12/51 (23%), Positives = 35/51 (68%)
Frame = +3
Query: 186 KAEEEARQLQKKIQTIENELDQTQESLMQVNGKLEEKEKALQNAESEVAAL 338
K +EE LQ ++ + NEL ++++ + ++ K + +++++++ ESE++++
Sbjct: 141 KLKEENENLQDMLRNVGNELVESRDEIKELIEKQKVQKESVKSHESELSSV 191
Score = 27.9 bits (59), Expect = 1.5
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = +3
Query: 129 LDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQESLMQVNGK---LEEKE 299
LD AA+ + A + K ++ ++ + N+L++ + + K L+EK
Sbjct: 26 LDEAAITKPPASKKKRKNRKKKKNNGPSEQFVGN--NDLEEQRSGSIDSKDKEKPLDEKV 83
Query: 300 KALQNAESEVAALNRRIQ 353
K L+NA ++ L RRIQ
Sbjct: 84 KELENANKTLSDLVRRIQ 101
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 30.7 bits (66), Expect = 0.21
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 126 ALDRAAMCEQQAKDANL--RAEKAEEEARQLQKKIQTIENELDQTQESLMQVNGKLEEKE 299
A R+++ + N+ + + +E R+L+K + NE+ QESL + N L +
Sbjct: 618 ATSRSSILSHNSSAGNIDDKMKSIDESTRELEKNYEVYRNEMTAIQESLSKRNQDLLSEM 677
Query: 300 KALQ 311
+A++
Sbjct: 678 EAIR 681
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 30.7 bits (66), Expect = 0.21
Identities = 22/59 (37%), Positives = 27/59 (45%)
Frame = -2
Query: 540 QRGTWLPSADSRGRPCAPHPPTTCSRAPYVRARIHRRPGWPRTAWRWRSRDAPRTSRGP 364
+RG + R R +P P SR+PY R RR PR +R RSR SR P
Sbjct: 101 ERGGRVHGDSGRLRSRSPSPHEARSRSPYNDERSDRRSMSPR--YRSRSRSPDGRSRSP 157
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 30.3 bits (65), Expect = 0.28
Identities = 14/63 (22%), Positives = 32/63 (50%)
Frame = +3
Query: 114 DXDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQESLMQVNGKLEE 293
+ D++ + C QAK + +A ++++ ++QTI E +Q Q ++++ +
Sbjct: 204 ELDSSEEACKSCYTQAKTWEKKFREALRDSKEYAAQLQTIHEEYEQQQAHIVRMEELIHA 263
Query: 294 KEK 302
EK
Sbjct: 264 VEK 266
Score = 25.8 bits (54), Expect = 6.1
Identities = 21/92 (22%), Positives = 37/92 (40%)
Frame = +3
Query: 417 EASQAADESERARKVLENRSLADEERMDALENQLKEARFLAEEADKKYDEVARKLAMVEA 596
+A++ + E+ ++ L R+ E +D+ E K A+ +KK+ E R A
Sbjct: 180 QAAELRSKDEQVKE-LNARNAKLLEELDSSEEACKSCYTQAKTWEKKFREALRDSKEYAA 238
Query: 597 DLXXXXXXXXXXXXKIVELEEELRVVGNNLKS 692
L IV +EE + V K+
Sbjct: 239 QLQTIHEEYEQQQAHIVRMEELIHAVEKERKT 270
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 29.9 bits (64), Expect = 0.37
Identities = 18/75 (24%), Positives = 37/75 (49%)
Frame = +3
Query: 120 DNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQESLMQVNGKLEEKE 299
DN L + E+ + ++ ++ + ++KI+ I +E D+ Q+ L +++ EEKE
Sbjct: 172 DNFLSSQTVHEENTAALDSEIDELMKQINEKEEKIEEISDETDKLQKLLRELD---EEKE 228
Query: 300 KALQNAESEVAALNR 344
K + LN+
Sbjct: 229 KVYAEEQEFYNNLNQ 243
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 29.5 bits (63), Expect = 0.49
Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 2/122 (1%)
Frame = +3
Query: 243 LDQTQESLMQVNGKLEEKEKALQNAESEVAALNRRIQXXXXXXXXXXXXXATATAKLS-- 416
L +QE L+Q+N KLE+ + S L+++++ ++
Sbjct: 480 LSDSQEELLQLNAKLEKANIVIDELNSAKLKLSKQVEEESSMKDDLTEMNQRLKEQIESY 539
Query: 417 EASQAADESERARKVLENRSLADEERMDALENQLKEARFLAEEADKKYDEVARKLAMVEA 596
E ++ + R K E E+ + L QLK AR + + D + + ++
Sbjct: 540 ENEVNSEITSRTLKEFETLKTQYEKNLCNLREQLKTARMKLADKYPQGDNTSENIDWLKH 599
Query: 597 DL 602
L
Sbjct: 600 SL 601
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 28.7 bits (61), Expect = 0.86
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +3
Query: 168 ANLRAEKAEEEARQLQKKIQTIENELDQTQ--ESLMQVNGKLEEKEKALQNAESEV 329
A++ AEK+EE + + + + EN D+T+ +SL+ GK EE E ++ +++
Sbjct: 407 ASVGAEKSEETSNGNKSEQEEKENGNDETRSNDSLVSGKGKGEENEDSVFETRAKI 462
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 0.86
Identities = 20/75 (26%), Positives = 27/75 (36%)
Frame = -2
Query: 522 PSADSRGRPCAPHPPTTCSRAPYVRARIHRRPGWPRTAWRWRSRDAPRTSRGPPPAVGYV 343
P DS P + +AP + P P RD P T R P G +
Sbjct: 479 PPKDSSSTSTQPTEQSNAQQAPSPKEEERPLPSEPSQNQPAEYRDTPDTPRNIMPLPGLM 538
Query: 342 GSGQPLRTQRSAEPS 298
+ QP++ EPS
Sbjct: 539 SADQPIKV---TEPS 550
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Frame = +3
Query: 183 EKAEEEARQLQKKIQTIENE--LD---QTQESLMQVNGKLEEKEKALQNAESEVAALN 341
EKAE E Q++ + +T EN+ +D + V+ L+ KE+AL +E E++ L+
Sbjct: 5 EKAELENMQVESEAKTSENDQTIDTKVDVADVTTHVDEDLDNKEEALDFSEDELSDLD 62
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +3
Query: 150 EQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQESLMQ----VNGKLEEKEKALQNA 317
E ++ ++K E L ++Q E LD ++SL ++ +EEK+KA+ A
Sbjct: 467 ENSLSSHDIDSQKLNSEIADLSLRLQQEELSLDDIRKSLQGKTEGISNAIEEKQKAMAPA 526
Query: 318 ESEVAALNRRIQ 353
++ L Q
Sbjct: 527 LEKINQLTSEKQ 538
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +3
Query: 423 SQAADESERARKVLENRSLADEERMDALENQLKEARFLAEEADKKYD 563
S +++ +R++L S + E D L + L+ RF+ ++A K Y+
Sbjct: 84 SLGSNQYSISRQLLRQPSFSSSENTDRLADLLRVRRFIYQKAWKSYE 130
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 186 KAEEEARQLQKKIQTIENELDQTQESLMQVNGKLEEKEKAL 308
K E R KI + D+T E + + G EE EKAL
Sbjct: 342 KISEIRRTSGSKISIAKEPHDETGERMFTITGTHEENEKAL 382
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 198 EARQLQKKIQTIENELDQTQESLMQVNGKLEEKEKALQNAESEVAALNR 344
E +LQK++QT+E E ++ +E L E+ L+ E+EV +L +
Sbjct: 621 EFDELQKRLQTLEEENNKAKEDSTSKTSNLLEQ---LKMTEAEVDSLRK 666
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 450 RARIHRRPGWPRTAWRWRSRDAPRTSRGPPPAVGYVGSGQPLRTQ 316
RAR H RP R + R + + A G PP+ + SG R +
Sbjct: 81 RARQHERPFRSRKSRRRKGKKAFSPRPGSPPSPSFYRSGSQKRAR 125
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +3
Query: 96 LQAXKLDXDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQESL 266
L+A KLD +DR C ++ AN R + E Q +E D+ +L
Sbjct: 310 LEAWKLDILEDIDRCIQCCRRFLSANQRINYSSSENNPFSFTSQDVEALKDELSSNL 366
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/55 (25%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +3
Query: 195 EEARQLQKKIQTIENELDQTQESLMQVNGKLEEKEKALQNAESE--VAALNRRIQ 353
EE + +KK++++ E+ + + ++ LEE +K + A++E V A N+ ++
Sbjct: 94 EEIQGCEKKLESLYEEVAKAKAKAVEDQLALEEADKEAKKAKTEAPVEAANKSLR 148
>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +3
Query: 129 LDRAAMCEQQAKDANLRAEKAEEEARQLQKK-----IQTIENELDQTQESLMQVNGKLEE 293
+++AAM + K+ + +E ARQL+ + I+ IE D+ Q+ M G+L E
Sbjct: 89 MEQAAMTTESLKNTMATVQTMQETARQLKSQSKNVSIEKIEKLQDEIQD-YMDAAGELNE 147
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 4.6
Identities = 29/109 (26%), Positives = 37/109 (33%)
Frame = -2
Query: 609 RAPSQPQPWPAYEQPHRISCRPPQRGTWLPSADSRGRPCAPHPPTTCSRAPYVRARIHRR 430
R + P P P P PP LP G P AP P + AP + A +
Sbjct: 411 RTSTPPVPTPPSLPPSAPPSLPPSAPPSLPM----GAPAAPPLPPSAPIAPPLPAGMPAA 466
Query: 429 PGWPRTAWRWRSRDAPRTSRGPPPAVGYVGSGQPLRTQRSAEPSPSLRA 283
P P A AP + P PA + + A S+RA
Sbjct: 467 PPLPPAA------PAPPPAPAPAPAAPVASIAELPQQDGRANLMASIRA 509
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 26.2 bits (55), Expect = 4.6
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +3
Query: 108 KLDXDNALDRAAMCE----QQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQESLMQV 275
K + DN + A++ E + K + A K + + KKI +NE +ESL
Sbjct: 1088 KPNNDNYIQIASVQELDDSSKGKAGKMPASKKNKRQKGDVKKIDETKNEATDMEESLTTP 1147
Query: 276 NGKLEEK 296
+GK+ ++
Sbjct: 1148 SGKVNKE 1154
>SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 123
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/60 (23%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +3
Query: 120 DNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKI-QTIENELDQTQESLMQVNGKLEEK 296
+NA + AKD + + +KA++ ++++++ Q EN L++T+ M +G ++++
Sbjct: 65 ENAKQSVKQTAKDAKDTDYQ-QKAKDAGKKIKEEFSQRSENVLEETRREGMNRDGGVKKE 123
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 195 EEARQLQKKIQTIENELDQTQESLMQVNGKLEEKEKALQNAESEVAA 335
E R+L+KK + +E + QE LMQ LEE+ ++N + A
Sbjct: 458 ESERELEKKKEQVEKK----QEELMQTRIVLEEQVFLVENMIEDAKA 500
>SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone
regulator|Schizosaccharomyces pombe|chr 2|||Manual
Length = 195
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 174 LRAEKAEEEARQLQKKIQTIENELDQTQESL 266
L +EK E +QL KIQ + + +DQT + +
Sbjct: 163 LGSEKLRFERKQLVSKIQKMLDHVDQTSQEV 193
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 600 SQPQPWPAYEQPHRISCRPPQRGTWLPSADS 508
S P P P QP ++S P LPSA S
Sbjct: 381 STPLPEPTPGQPRKVSGHNPPSARRLPSASS 411
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.4 bits (53), Expect = 8.0
Identities = 29/184 (15%), Positives = 62/184 (33%)
Frame = +3
Query: 153 QQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQESLMQVNGKLEEKEKALQNAESEVA 332
++ +D +R + R L ++QT+ + + S+ N LEE+ LQ +
Sbjct: 282 KKIEDERMRQMSVSSD-RTLDSQLQTVNENITRISTSIELKNTALEEEHGDLQQIRGKAK 340
Query: 333 ALNRRIQXXXXXXXXXXXXXATATAKLSEASQAADESERARKVLENRSLADEERMDALEN 512
L ++ + S+ E L E
Sbjct: 341 ELETLLRGKRKRLDEVLSVYEKRKDEHQSISKDFKSQEELISSLTTGLSTTEGHETGYSR 400
Query: 513 QLKEARFLAEEADKKYDEVARKLAMVEADLXXXXXXXXXXXXKIVELEEELRVVGNNLKS 692
+L EAR + + + KL + + + +L E+ ++ N+++
Sbjct: 401 KLHEARDTLNDFKAEKETNRLKLEGLNKQISLTKPKKAEATKRCDQLNREIDILQNHVEK 460
Query: 693 LEVS 704
L++S
Sbjct: 461 LKMS 464
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 216 KKIQTIENELDQTQESLMQVNGKLEE 293
+KIQT+E + +T++ L G+L++
Sbjct: 785 EKIQTLERRISETEKELESYAGQLQD 810
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +3
Query: 57 KNKTTKMDAXNHXLQAXKLDXDNALDRAAMCEQQAKDAN---LRAEKAEEEARQLQKKIQ 227
K T + + L K + L+ + EQ+ +AN L+ E+ E + ++I
Sbjct: 54 KQSATDSELLHKNLDEIKFLQNEKLNNEKLLEQEQNEANDYRLKVERLEHKISDYVQEIN 113
Query: 228 TIENELDQTQES 263
++ ++L Q Q+S
Sbjct: 114 SLNSQL-QIQKS 124
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +3
Query: 183 EKAEEEARQLQKKIQTIENELDQTQESLMQVNGKLEEKEKALQNAESEVAAL 338
++ + +L+++ + N+L+ Q S Q L E ALQ V +L
Sbjct: 2018 KRIQSSVSRLEERNAQLRNQLEDVQASETQWKFALRRTEHALQEERERVKSL 2069
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,130,070
Number of Sequences: 5004
Number of extensions: 38556
Number of successful extensions: 262
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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