Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_A01
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    33   0.052
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    32   0.12 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    29   1.1  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    28   1.5  
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.9  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    27   3.4  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    27   4.5  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   5.9  
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    26   7.8  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    26   7.8  

>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 33.1 bits (72), Expect = 0.052
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +2

Query: 281 LIAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKH 394
           LI  + QV++  +RLRK+ + ++ E+  LL  L+ ++H
Sbjct: 359 LIGKMSQVQIECKRLRKENLFLQSERTHLLRELEELRH 396


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 24/104 (23%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
 Frame = +2

Query: 293 LDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSE--LLLDISE-C--DKDDITRYADR 457
           L+  E+  +R+++D +    E+ S+ +  D I  SE   +L+  E C  D D+I++  + 
Sbjct: 188 LNSAELEWKRVQQDQLTSASER-SIENIADDIPASEPKAILENGEGCLNDNDNISKLKNN 246

Query: 458 ILSRAMTVEVTVRTDRDHQQEEALYQVNMYIDQLVMSVHNDAVS 589
             S+A  ++  + +  D   +++     +Y+D  +M + ++ VS
Sbjct: 247 FQSQADLMQANINSKLDELSQKSTRAAQLYVD--IMGITDERVS 288


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +2

Query: 179  EVDQFALEIAYPEGSRLPLIDESSVLGTQAPKDRL-IAVLDQVEMRVERLRKDTVRIEEE 355
            EV    L IA+ +G +LP+ +      T+   D + I  ++ V  R      +T+R EE 
Sbjct: 2644 EVIHIDLGIAFEQGKKLPVPECVPFRLTRDVVDGMGITGVEGVFRRCMEFTLETLRREE- 2702

Query: 356  KDSLLSTLDSIKHSEL 403
             DSLLS L+ +++  L
Sbjct: 2703 -DSLLSVLEVLRYDPL 2717


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +2

Query: 221 SRLPLIDESSVLGTQAPKDRLIAVLDQVEMRVERLRKDTVRIEEEKD 361
           S + L+DE++    +  ++    VLD +E ++ +LR +   +E EKD
Sbjct: 393 SAIDLVDEAAA-AVRVTRESQPEVLDNLERKLRQLRVEIRALEREKD 438


>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 218 GSRLPLIDESSVLGT-QAPKDRLIAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIK 391
           GSR P      ++ T Q   DRL    D+V + + + RK    +E  K++LL+  DS+K
Sbjct: 61  GSRKP--SSGQLIATMQNEIDRLKKEGDKVSILLMQERKKRKELESAKNNLLNVYDSLK 117


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = +1

Query: 640 PQRGHRQEL*DGHPGLHPRRSEARQETTPRPAGLHREVKR 759
           P   H   L D H  L    SE   E TP PA L +  KR
Sbjct: 542 PVLKHTSSLLDHHSPLATSSSEHEMEATPSPALLKKTNKR 581


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 290 LLSVCLSAPAFLEPRIRR*GVVVNPLDTQSLMQ 192
           LL+  L AP    PR+RR   ++  +DT+S+ +
Sbjct: 270 LLTAALDAPYHDSPRVRRQDYLLGLIDTRSMSE 302


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = +2

Query: 173  TMEVDQFALEIAYPEGSRLPLIDESSVLGTQAPKDRLIAVLDQVEMRVERLRKDTVRIEE 352
            T E ++  + +     +   L++E S L  +   D   ++ D   + +  +R D VR+ +
Sbjct: 1150 TNEKNELIVSLEQSNSNNEALVEERSDLANRL-SDMKKSLSDSDNV-ISVIRSDLVRVND 1207

Query: 353  EKDSLLSTLDSI--KHSELLLD 412
            E D+L    DS+  ++SE+  D
Sbjct: 1208 ELDTLKKDKDSLSTQYSEVCQD 1229


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +2

Query: 332 DTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMTVE 484
           +T   EEE   LLST D+I     LL+  E  +D    +   +L     +E
Sbjct: 459 ETDEEEEESQYLLSTKDAINAINTLLNFQEQSEDGNVLFTRTLLQFQKVLE 509


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 123 LIDQRC*QAQNKVFTIFFDVNIQLPHCKLPKQN 25
           L+  +     +K  + F+DV +   +CKL K N
Sbjct: 781 LLSSKSPDVSSKAISFFYDVQLAYENCKLGKLN 813


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,383,842
Number of Sequences: 5004
Number of extensions: 69405
Number of successful extensions: 228
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)