Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_A01
         (855 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   2.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   2.1  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   8.3  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 230 VVVNPLDTQSLMQIDPP 180
           VVV+P D  +++QID P
Sbjct: 618 VVVSPFDDSNVVQIDSP 634


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 230 VVVNPLDTQSLMQIDPP 180
           VVV+P D  +++QID P
Sbjct: 618 VVVSPFDDSNVVQIDSP 634


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 119 SISAVNKLKTKSLQFSLTSIFNYRTAN 39
           S S VNK    S   S ++++ YR AN
Sbjct: 23  SYSCVNKSMLNSHLKSHSNVYQYRCAN 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,751
Number of Sequences: 438
Number of extensions: 5274
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)