Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_P24
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   282   4e-77
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   281   6e-77
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    27   4.3  
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr...    26   5.6  

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  282 bits (692), Expect = 4e-77
 Identities = 140/229 (61%), Positives = 169/229 (73%), Gaps = 1/229 (0%)
 Frame = -1

Query: 740 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRXAGGNDKQG 561
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV +  GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 560 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 381
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQD 120

Query: 380 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPK 204
           IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   KP  KAPK
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPK 177

Query: 203 IQRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRR 57
           IQRLVTP  LQ                +   AE+A+L+A+R  E+K +R
Sbjct: 178 IQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKR 226


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  281 bits (690), Expect = 6e-77
 Identities = 140/229 (61%), Positives = 169/229 (73%), Gaps = 1/229 (0%)
 Frame = -1

Query: 740 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRXAGGNDKQG 561
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV +  GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 560 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 381
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQD 120

Query: 380 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPK 204
           IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   KP  KAPK
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPK 177

Query: 203 IQRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRR 57
           IQRLVTP  LQ                +   AE+A+L+A+R  E+K ++
Sbjct: 178 IQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKK 226


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
 Frame = +3

Query: 174 QNYRGD*PLDLRCLMSGF----SIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFGSTFGT 341
           +N   D P  L C+ +      S+ FS  G   A       +I + K E +   GSTFG 
Sbjct: 57  ENENEDLPKQLCCMSTHTGTVTSVRFSPNGQYLASGSDDRVVIIWHKEEAIPGLGSTFG- 115

Query: 342 *TAGYISISQSRNFLGTLAHNNKSQD 419
             +G       R++   L H+N  QD
Sbjct: 116 --SGEKHTENWRSYRRLLGHDNDIQD 139


>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 323

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +3

Query: 3   KXLESRIEADRLRLISSWATHLGFLLSLCKQFSIFSLRGLALSETLLLQSETMTSTLQNY 182
           K +E   + DRL+ +    TH    LS+C  + +  ++     E    +++T T  +  Y
Sbjct: 72  KCVEQWTKGDRLKAVQYAKTHYETFLSICDDYGLKPMQ----DEKPKTEADTRTLKIARY 127

Query: 183 R 185
           R
Sbjct: 128 R 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,268,950
Number of Sequences: 5004
Number of extensions: 64700
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)