Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_P23
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 28 1.4
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 27 3.1
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 27 3.1
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 27 3.1
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 26 4.1
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 26 5.5
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 25 7.2
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me... 25 9.5
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 25 9.5
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 25 9.5
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +3
Query: 396 LMTSWSGGFTVAATHSLPRWLVYHERPSWSLMPSTSNEAQGWCMERHLPVSLISCNSASC 575
L S +G + A P ++ HE +W+ S+ + R LP+ + + + A+C
Sbjct: 143 LSQSSNGTLYMRAYQLTPEFMAAHEEKTWTASSLNSHNLTPSNVIRELPIVIHNSHLATC 202
Query: 576 -IRDIWENPLARTTV 617
+ + E P +T+
Sbjct: 203 LLHSLSEPPTPASTL 217
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = -1
Query: 403 VIKALENQYRVLYP---EKQLQFPSFYPTGCLLGCVNVDDCLPQEEYRKMYPEGESDSPY 233
V+KA+ + V + E+ + Y + C N ++C P+ + Y + D P
Sbjct: 39 VVKAISGVHTVRFKNELERNITIKLGYANAKIYKCSN-EEC-PRPGCYRSYSSNKEDHPP 96
Query: 232 VFICSNPVSL 203
IC++P++L
Sbjct: 97 CEICNSPMNL 106
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 26.6 bits (56), Expect = 3.1
Identities = 25/87 (28%), Positives = 38/87 (43%)
Frame = +3
Query: 234 YGLSLSPSGYIFRYSSWGRQSSTLTQPSRHPVG*NEGNCNCFSGYRTLYWFSSALMTSWS 413
YG + S +G +S W + S + S VG G +C + RT F+ A+ WS
Sbjct: 266 YG-TFSTAGSDGTFSFWDKDSHQRLK-SYPNVG---GTISCSTFNRTGDIFAYAISYDWS 320
Query: 414 GGFTVAATHSLPRWLVYHERPSWSLMP 494
G+T LP ++ H P + P
Sbjct: 321 KGYTF-NNAQLPNKIMLHPVPQDEIKP 346
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Frame = +3
Query: 360 SGYRTLYWFSSALMTSWSGGFTVAATHS---LPRWLVYHERPSWSLMPSTSNEAQGWCME 530
+G RT W S + +W+ G A +S P W P+W ++ N+ W +
Sbjct: 832 TGSRTPAWNSGSKTPAWNSGSRTPAWNSGNKTPAWNAGSRTPAW----NSGNKTPAWNVG 887
Query: 531 RHLP 542
P
Sbjct: 888 NKTP 891
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = -1
Query: 454 HR-GRLWVAATVKP--PDQDVIKALENQYRVLYPEKQLQFPSFYPTGCLL 314
HR R + + +KP DV+ +EN R L E L+ +PTG L
Sbjct: 124 HRQARQYAQSVIKPGMSMMDVVNTIENTTRALVEEDGLKSGIGFPTGVSL 173
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -1
Query: 361 EKQLQFPSFYPTGCLLGCVNVDDCLPQEEY 272
E LQ + C+LG N DC+ E Y
Sbjct: 64 ELNLQRVEYQGKDCILGITNFGDCIDDEWY 93
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 623 LCDCCSSQRVLPDVSYTRRRV 561
LCD S R+ PDV T+ R+
Sbjct: 79 LCDAKQSDRIKPDVPKTQSRI 99
>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
membrane translocase Oxa102|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 375 LYWFSSALMTSWSGGFTVAATHSLPRWLVYHERPSWSLMPSTSNEA 512
+YWF S + + + G F ++T + L E PS +P+ NE+
Sbjct: 293 MYWFPSNVFSVFQGAFLRSST--IRHKLGLPEVPSAMPVPNAQNES 336
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = -3
Query: 455 PPREAVGRRHGEAPRPGRHQGAGEPVQSSVSRKAIAIPLVLSDWMSAGL 309
PP+ ++ RR PRP + E +Q+++ +P ++ + S L
Sbjct: 517 PPQPSISRRPSVIPRPQEGSKSMEAIQNALVLVHCRMPYSINGFSSTKL 565
>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +3
Query: 345 NCNCFSGYRTLYWFSSALMTSWSGGFTVAATH 440
+C C GY + W +L T G + A+H
Sbjct: 160 DCLCLYGYANIVWLPVSLATPPFGLLSTLASH 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,888
Number of Sequences: 5004
Number of extensions: 60062
Number of successful extensions: 167
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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