Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_P23
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0763 + 36081546-36081669,36081755-36082170,36082280-360823... 86 3e-17
08_02_1441 - 27116242-27116354,27116646-27116742,27116841-271170... 33 0.20
01_06_1790 - 39888313-39888350,39888437-39888530,39888612-398888... 33 0.20
02_01_0772 - 5755371-5756654,5757808-5757834 32 0.35
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387... 30 1.9
05_05_0193 - 23138066-23138434,23138489-23138581 29 3.2
02_01_0153 - 1073790-1074026,1074110-1074595,1074686-1075213,107... 29 3.2
01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833 29 4.3
06_03_0335 + 19662933-19663334,19663358-19664023 28 5.6
05_03_0461 - 14299138-14299313,14299360-14299437,14299459-142995... 28 5.6
08_01_0972 - 9789453-9790364,9790383-9790861,9791071-9792238 28 7.5
07_03_0747 - 21184839-21184939,21185078-21185338,21185445-21186903 28 7.5
07_01_0857 - 7127681-7127830,7128896-7129414 28 7.5
06_01_1066 - 8656108-8657622 27 9.9
02_04_0572 + 23972319-23973683 27 9.9
02_04_0135 + 20122162-20122433,20123652-20123856 27 9.9
01_07_0036 + 40647046-40647100,40647120-40647571,40648135-406482... 27 9.9
>03_06_0763 +
36081546-36081669,36081755-36082170,36082280-36082339,
36082466-36083101
Length = 411
Score = 85.8 bits (203), Expect = 3e-17
Identities = 42/78 (53%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Frame = -1
Query: 535 CLSMHQPWASLLVEGIKLHEGRSWYTSHRGRLWVAATVKPPDQDVIKALENQYRVLYP-- 362
CL+MHQPWASLLV GIK EGRSW + GRLW+ A K P+ D IKA+E YR +Y
Sbjct: 13 CLTMHQPWASLLVHGIKRVEGRSWPSPLTGRLWIHAASKVPEADTIKAMEEFYREIYALD 72
Query: 361 -EKQLQFPSFYPTGCLLG 311
+ FP YP LLG
Sbjct: 73 GITNITFPHHYPVSRLLG 90
Score = 33.1 bits (72), Expect = 0.20
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = -1
Query: 250 ESDSPYVFICSNPVSLRLRFPIKGQHKIYXLEKTIHQAAMK 128
E+ + + ++C NP L + F ++G +Y LE+ I++ A++
Sbjct: 167 EALTDFCWLCENPQKLVVPFDMRGYQGVYNLERRIYEGAVR 207
>08_02_1441 -
27116242-27116354,27116646-27116742,27116841-27117058,
27117279-27117422,27117512-27117608,27117932-27118026,
27118140-27118231,27118326-27118471,27118565-27118664,
27118857-27118964,27119040-27119085,27119210-27119345,
27119847-27120044
Length = 529
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 406 DVIKALENQYRVLYPEKQLQFPSFYPTGCLLGCV 305
D+ + LEN R L E L+ +PTGC L CV
Sbjct: 213 DLCETLENMVRKLIKENGLEAGIAFPTGCSLNCV 246
>01_06_1790 -
39888313-39888350,39888437-39888530,39888612-39888836,
39888944-39889018,39889144-39889212,39889319-39889384,
39889492-39889713,39889794-39890681,39890973-39891053,
39892546-39892598,39893010-39893088,39893218-39893319
Length = 663
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 491 HQTPRRSFMVHEPPREAVGRRHGEAPRPGRHQGAGEPVQS 372
H P S MV P + G HG +P+P H G G P+ S
Sbjct: 216 HLDPALSSMVSSPASNSTGALHGISPQP--HYGGGTPLSS 253
>02_01_0772 - 5755371-5756654,5757808-5757834
Length = 436
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +1
Query: 427 WRRPTASLGGSCTMNDLRGV*CLQRATRPRAGAWRG 534
WR P+ASLGG D + C RA AGAW G
Sbjct: 316 WRSPSASLGGRLYAADCKDG-CRLRAYDEAAGAWSG 350
>12_02_1200 +
26937624-26937674,26937913-26938005,26938582-26938728,
26940299-26940379,26940711-26940849,26940977-26941013,
26941095-26941202,26941434-26941533,26941638-26941783,
26941862-26941953,26942086-26942180,26942435-26942531,
26942623-26942766,26942912-26943129,26943213-26943323
Length = 552
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 406 DVIKALENQYRVLYPEKQLQFPSFYPTGCLLGCV 305
D+ + LEN R L E LQ +PTGC L V
Sbjct: 269 DLCETLENMVRKLIKENGLQAGIAFPTGCSLNWV 302
>05_05_0193 - 23138066-23138434,23138489-23138581
Length = 153
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 488 QTPRRSFMVHEPPREAVGRRHGEAPRPGRHQGAG-EPVQSSVSRKAI 351
Q P+R + + + GEAP GR +GAG +P+ V KA+
Sbjct: 3 QLPKRPAIASSSKPKVLQGEAGEAPERGRGRGAGSDPIGPHVHLKAL 49
>02_01_0153 -
1073790-1074026,1074110-1074595,1074686-1075213,
1075421-1075513,1075620-1075671,1075800-1075904,
1076020-1076180
Length = 553
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = -3
Query: 491 HQTPRRSFMVHEPPREAVGRRHGEAPRPGRHQGAGE-PVQSSVSRKAIAIPLVLSDWMSA 315
H P + H PP VG + +A P HQ V S SR++ P + D +
Sbjct: 347 HHKPPDVLIDHPPPASLVGLDNDDASPPNSHQQQPPLAVSGSSSRRSNKDPAMTDDKVGG 406
Query: 314 G 312
G
Sbjct: 407 G 407
>01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833
Length = 503
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -3
Query: 503 AR*RHQTPRRSFMVHEPPREAVGRRHGEAPRPGRHQGAGEP 381
AR H + H PP +A G AP P RH GA P
Sbjct: 34 ARHHHAKHAKRNAAH-PPSQAPGPAARHAPGPARHHGAPAP 73
>06_03_0335 + 19662933-19663334,19663358-19664023
Length = 355
Score = 28.3 bits (60), Expect = 5.6
Identities = 26/82 (31%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Frame = -3
Query: 620 CDCCSSQRVLPDVSYTRRRVAGDERHRQVPLHAPALGLV--AR*RHQTPRRSFMVHE--- 456
C C + DV+ RR+ R PLH P + AR R RR +
Sbjct: 122 CVVCLQELADGDVALLPRRLHRPLAAR--PLHVPGVPRAPGARRRAAQRRRGRVAAAAAA 179
Query: 455 -PPREAVGRRHGEAPRPGRHQG 393
P R G HG RPG H G
Sbjct: 180 APVRPVAGAAHGGVARPGGHPG 201
>05_03_0461 -
14299138-14299313,14299360-14299437,14299459-14299583,
14299918-14300078
Length = 179
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -3
Query: 647 RSVSGK*GLCDCCSSQRVLPDVSYTR--RRVAGDERHRQVPLHAPAL 513
R + GK L +C LP +++ R R +AG R++PLHAP L
Sbjct: 109 RFIVGKEPLHNCYGDP--LPAINHPREERFIAGRRLSRKLPLHAPLL 153
>08_01_0972 - 9789453-9790364,9790383-9790861,9791071-9792238
Length = 852
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 459 VYHERPSWSLMPSTSNEAQGWCMERHLPVSLISCN 563
++ + W L+PS SN+ + +ER ++ SC+
Sbjct: 137 LFQAKDRWVLLPSDSNDNSSYIVERSQHLAATSCS 171
>07_03_0747 - 21184839-21184939,21185078-21185338,21185445-21186903
Length = 606
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = -1
Query: 616 TVVRANGFSQMSRIQDAE---LQEMSDTGRCLSMHQPWASLLVEGIKLHEGRSWYTSH 452
++++ANG S + RI DA+ L M++TG + + P A L G L W T++
Sbjct: 76 SLLKANGISAV-RIFDADQTVLDAMANTGIKVMVAIPNADLAAAGQDLRSATDWVTNN 132
>07_01_0857 - 7127681-7127830,7128896-7129414
Length = 222
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 219 EQINTYGLSLSPSGYIFRYSSWGRQSSTLTQP 314
E + + ++L P G +F+ WG+ S QP
Sbjct: 47 EPLYRHAVTLRPRGRVFKQHGWGQHSVVTLQP 78
>06_01_1066 - 8656108-8657622
Length = 504
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 605 SQRVLPDVSYTRRRVAGDERHRQVPLHAP 519
S+++L +S R+VAG R + + LH P
Sbjct: 358 SEKLLYALSLLARKVAGSRRRKAIKLHVP 386
>02_04_0572 + 23972319-23973683
Length = 454
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 509 GPGLVHGEAPAGVAHLLQLCVLYTRH 586
G +HGE P+ VA+L QL +L H
Sbjct: 373 GNNYLHGEVPSSVANLQQLVLLDLSH 398
>02_04_0135 + 20122162-20122433,20123652-20123856
Length = 158
Score = 27.5 bits (58), Expect = 9.9
Identities = 26/68 (38%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Frame = -3
Query: 572 RRRVAGDERHRQ--VPLHAPALGLVAR*RHQ----TPRRSFMVHEPPREAVGRRHGEAPR 411
RRRV G R R V L A G AR R+ PPR AVGR G R
Sbjct: 10 RRRVRGSRRRRPLGVDLAKAAAGRRARSSSAFLAAAQERAAGSMAPPRLAVGRSRGGGAR 69
Query: 410 PGRHQGAG 387
QG G
Sbjct: 70 HRPGQGGG 77
>01_07_0036 +
40647046-40647100,40647120-40647571,40648135-40648257,
40648407-40648461,40648613-40648722,40649352-40649531,
40650003-40650101,40651182-40651280,40652195-40652289,
40652290-40652378,40652739-40652901,40653299-40653404,
40655647-40655829,40656059-40656286,40656373-40656486
Length = 716
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 533 PLHAP-ALGLVAR*RHQTPRRSFMVHEPPREAVGRRHGEAPRPGRHQGAGEPV 378
PL A AL R ++T R +++ E P+E+ GRR G + R + EPV
Sbjct: 44 PLEAALALRRSVRCLNRTRRPTYVEQEEPKESAGRRRGGKRK--REEEKKEPV 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,540,824
Number of Sequences: 37544
Number of extensions: 474487
Number of successful extensions: 1661
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1660
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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