Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_P22
(497 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 236 1e-63
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 116 2e-27
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 106 2e-24
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 103 2e-23
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 94 1e-20
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 71 1e-13
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 70 2e-13
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 69 3e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 43 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 0.90
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 1.6
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 25 4.8
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 4.8
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 6.3
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 8.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 236 bits (578), Expect = 1e-63
Identities = 107/123 (86%), Positives = 115/123 (93%)
Frame = -3
Query: 495 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 316
ERFR PEALFQPS LG+E+ GIHE YNSIMKCDVDIRKDLY N VMSGGTTMYPGIADR
Sbjct: 253 ERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADR 312
Query: 315 MQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 136
MQKEI ALAPS++K+KI+APPERKYSVWIGGSILASLSTFQQMWISK+EYDESGPGIV+R
Sbjct: 313 MQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYR 372
Query: 135 KCF 127
KCF
Sbjct: 373 KCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 116 bits (279), Expect = 2e-27
Identities = 52/123 (42%), Positives = 82/123 (66%)
Frame = -3
Query: 495 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 316
E F PE LF P +G E+ G+H ++ SI+ D+D+R LY+N V+SGG+T+ G +R
Sbjct: 258 ECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGER 317
Query: 315 MQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 136
E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ EEY ++ ++ R
Sbjct: 318 FISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFR 376
Query: 135 KCF 127
+ F
Sbjct: 377 RRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 106 bits (254), Expect = 2e-24
Identities = 56/125 (44%), Positives = 74/125 (59%), Gaps = 11/125 (8%)
Frame = -3
Query: 495 ERFRCPEALFQPSFLGMESC---------GIHETVYNSIMKCDVDIRKDLYANTVMSGGT 343
ERFR E LF PSF S G+HE VY SI+ CD ++R L N V++GGT
Sbjct: 294 ERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGT 353
Query: 342 TMYPGIADRMQKEITALAP-STIKIKII-APPERKYSVWIGGSILASLSTFQQMWISKEE 169
++ PG+++R+Q E+ LA S I + +VW GGSILASL FQ +W+SK+E
Sbjct: 354 SLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQE 413
Query: 168 YDESG 154
YDE G
Sbjct: 414 YDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 103 bits (246), Expect = 2e-23
Identities = 53/126 (42%), Positives = 80/126 (63%), Gaps = 12/126 (9%)
Frame = -3
Query: 495 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 316
ER+ CPE LFQP +G E G+ E ++++I DVDIRK LY V+SGG++MY G+ R
Sbjct: 253 ERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSR 312
Query: 315 MQKEITAL--------APSTI---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKE 172
++KEI L P+ + K+KI P R+++V+IGG++LA ++ MW+SK
Sbjct: 313 LEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKA 372
Query: 171 EYDESG 154
E++E G
Sbjct: 373 EWEEYG 378
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 93.9 bits (223), Expect = 1e-20
Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Frame = -3
Query: 435 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 256
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 255 P---ERKYSVWIGGSILASLSTFQQMWISKEEYDESGP---GIVHRKC 130
ER Y+ W+GGSIL+SL TF Q+WIS++EY+E G ++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 70.9 bits (166), Expect = 1e-13
Identities = 32/115 (27%), Positives = 62/115 (53%)
Frame = -3
Query: 495 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 316
E+ R PE +F PS +G++ GI E + + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 315 MQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 151
+++E+T++ P I + W G S + F+ +++EEY E GP
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 70.1 bits (164), Expect = 2e-13
Identities = 40/121 (33%), Positives = 59/121 (48%)
Frame = -3
Query: 495 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 316
ERF PE LF PS + + GI E V S+ +I+ L N V GG +PG R
Sbjct: 279 ERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKR 338
Query: 315 MQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 136
+ E+ +LAP+ ++K+ P + W S + L + I++ EY E G I+ R
Sbjct: 339 LSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTR 397
Query: 135 K 133
K
Sbjct: 398 K 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 69.3 bits (162), Expect = 3e-13
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 15/135 (11%)
Frame = -3
Query: 495 ERFRCPEALFQPSFLGMESCG-IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIAD 319
ERF PE F P + + E V N + +D+RK LY N V+SGG+T++ +
Sbjct: 285 ERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGN 344
Query: 318 RMQKEITALAPSTI--------------KIKIIAPPERKYSVWIGGSILASLSTFQQMWI 181
R+Q+++ + I + +I+ ++ +VW GGS+LA F
Sbjct: 345 RLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCH 404
Query: 180 SKEEYDESGPGIVHR 136
+K +Y+E G I R
Sbjct: 405 TKADYEEYGASIARR 419
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 43.2 bits (97), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -3
Query: 381 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILA 211
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 210 SLSTFQQMWISKEEYDESGPGIVHRK 133
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 0.90
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -3
Query: 234 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 133
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 309 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 199
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.4 bits (53), Expect = 4.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 71 ELGRAQHHTAPGSRGRAA*KHLRWT 145
E+ R++ H+ PGS+G A +L WT
Sbjct: 46 EISRSETHSIPGSKGEA---NLIWT 67
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 4.8
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 430 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 302
PR+ V R+R P P + R V PR RRQ +G+
Sbjct: 41 PRELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGN 83
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 283 DHQDQDHRSPREEVLRMDRWIHPG 212
D D+ R+ E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 242 YFLSGGAMILILMVEGARAVISFCILSAIPGY 337
Y +SGGA + +A +S CI +PGY
Sbjct: 412 YCISGGAAL----AASTQAFLSSCICPVLPGY 439
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,806,050
Number of Sequences: 5004
Number of extensions: 33722
Number of successful extensions: 111
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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