Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_P16
(630 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 31 0.18
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 26 3.9
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 26 3.9
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 26 3.9
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 5.2
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 26 5.2
SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com... 25 6.8
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 25 6.8
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb... 25 9.0
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 30.7 bits (66), Expect = 0.18
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -2
Query: 158 IVGNVTKAILSNEYVFE*VQSVPGHNPARRRRTEPIGWKRGAQ*RLKRA 12
++G A+L E E ++ PG NP +++ +R AQ R K+A
Sbjct: 374 LIGKAGNALLQQELALEGHRAKPGENPLAKKKVNKKRKERAAQWRNKKA 422
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 26.2 bits (55), Expect = 3.9
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -3
Query: 484 DVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSVEG 374
D F V + VQ P T +AK F P + K S EG
Sbjct: 208 DPRFTDPRTVFEEVQEPVTNVDAKVFHPEKRKRSREG 244
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 26.2 bits (55), Expect = 3.9
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Frame = -3
Query: 556 WLKNNPEFLEAFLYWIDEILQSHNDVYFVTMTQVIQWVQNPRT--VTEAKNFEPWREKCS 383
W++ F+E FL + D +Q +++ QV V T V E + P+ + +
Sbjct: 545 WVEKIVSFIEQFLNFQDMEIQRRASEFYILFNQVSDIVNTSDTMEVLELQKKPPYIVQNT 604
Query: 382 VE----GNPACWVPHSCKLTSKEVPGETINLQTCLRCPVN 275
+ G P P + K K +P E ++ L CP+N
Sbjct: 605 MYKLFFGEPL--NPVAVKAQRKVMPDENLD----LNCPIN 638
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 338 HFKGSSRRNHQFTNLFEMPSQLPL 267
HF+ S++ N T+LFE S+L L
Sbjct: 154 HFEASAKENTNVTDLFETVSRLAL 177
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 5.2
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = -2
Query: 296 LFEMPSQLPLVKRPH-----GRWPLLRSHDLEPHVLY*LILIWCSSCSKYIIVGNV 144
L+ +P +P+ H G WPL S + E + + I S CSKY+ GNV
Sbjct: 1290 LYLLPKIIPVALSLHNAEFQGLWPLRNSSEKEE--VCSVFNISKSVCSKYVQFGNV 1343
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 5.2
Identities = 19/74 (25%), Positives = 30/74 (40%)
Frame = -2
Query: 500 PSKPQRRLLRYHDTSDPMGTKPTYRD*SQELRAVERKVLRRRKPCMLGTSFLQAHFKGSS 321
P P + + HD + + T + D +L R+ LRR L S L ++
Sbjct: 260 PWPPNQHIKFAHDDKNVVSTDFIHPDWQYKLERARRRALRRAANATLLNSHLLETGPANA 319
Query: 320 RRNHQFTNLFEMPS 279
NH T+L P+
Sbjct: 320 NANHN-TDLSHDPT 332
>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
complex anchor subunit Tim18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 186
Score = 25.4 bits (53), Expect = 6.8
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = -3
Query: 547 NNPEFLEAFLYWIDEILQSHNDVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSVEGNP 368
N+P +F ++ + +LQ+ + + +++ V++ T + AK F P + N
Sbjct: 13 NSPTTTTSFSWFTNNMLQTRLGLGALRQGRLLFAVKSFSTTSVAKIFPPPPQTIKGTVND 72
Query: 367 ACWVPHSCKL 338
A PH KL
Sbjct: 73 AAVFPHHSKL 82
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 355 PHSCKLTSKEVPGETINLQTCLRCP 281
P+S +TS PGE +N L+ P
Sbjct: 329 PYSFPITSSVHPGEDVNFTVALKVP 353
>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -1
Query: 417 PRTSSRGEKSAPSKET-LHAGYLIPASSLQRKFPEKPSIYK 298
P S G+ K+T L + AS QRK EKPS+ K
Sbjct: 193 PLLSVDGDSPLTEKDTNLTTPATLKASDQQRKVLEKPSVSK 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,824,664
Number of Sequences: 5004
Number of extensions: 62755
Number of successful extensions: 185
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -