Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_P16
(630 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 71 7e-13
U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical p... 47 1e-05
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 47 1e-05
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr... 47 1e-05
AC006709-1|AAF60432.2| 256|Caenorhabditis elegans Hypothetical ... 32 0.29
AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical ... 30 1.6
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ... 30 1.6
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ... 30 1.6
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr... 28 6.3
AC006605-8|AAK85439.2| 741|Caenorhabditis elegans Ligase protei... 28 6.3
Z50005-1|CAA90294.1| 334|Caenorhabditis elegans Hypothetical pr... 27 8.4
U67954-8|AAB52608.2| 782|Caenorhabditis elegans Sulfate permeas... 27 8.4
AY954524-1|AAX34432.2| 762|Caenorhabditis elegans anion transpo... 27 8.4
AY887909-1|AAX34421.1| 782|Caenorhabditis elegans anion transpo... 27 8.4
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 70.9 bits (166), Expect = 7e-13
Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 11/137 (8%)
Frame = -3
Query: 625 LNHNFDRHYXQNRAPLGLYFHAAWLK--NNPEFLEAFLYWIDEILQSHNDVYFVTMTQVI 452
+ NF+R Y NRAP L +A +L+ + + ++A +++ + + DVY VT+ Q+I
Sbjct: 1738 ITRNFERSYSANRAPYVLSLNADFLQLGGHNKGMKAVQKFLNR-MSAQKDVYIVTIKQLI 1796
Query: 451 QWVQNPRTVTEAKNFEPWREK--C----SVEGNPA---CWVPHSCKLTSKEVPGETINLQ 299
W++ P ++E K+ + C S NP+ C +P+ C ++ + +
Sbjct: 1797 DWMKRPVPISEMKSVRGKSKAVGCPITLSFNRNPSLSTCDIPNKCLYSTPSLSSQEHQFL 1856
Query: 298 TCLRCPVNYPWLNDPTG 248
TCL CP YPWL +P G
Sbjct: 1857 TCLPCPTMYPWLENPAG 1873
>U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical
protein F48E3.8c protein.
Length = 358
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = -3
Query: 484 DVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSV--EGNPACWVPHSCKLTSKEVPGET 311
DV+ VT +Q+I +++NP + K+ W+ K + E NP C P +C + +
Sbjct: 284 DVFVVTGSQIIDYMRNPVDLNNIKSLRSWQCKPQMKDEANP-CENPTTCSFSGRARGQFA 342
Query: 310 INLQTCLRCPVNYPWL 263
+ + C CP +YPW+
Sbjct: 343 HSFRMCGVCPKSYPWI 358
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = -3
Query: 484 DVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSV--EGNPACWVPHSCKLTSKEVPGET 311
DV+ VT +Q+I +++NP + K+ W+ K + E NP C P +C + +
Sbjct: 2353 DVFVVTGSQIIDYMRNPVDLNNIKSLRSWQCKPQMKDEANP-CENPTTCSFSGRARGQFA 2411
Query: 310 INLQTCLRCPVNYPWL 263
+ + C CP +YPW+
Sbjct: 2412 HSFRMCGVCPKSYPWI 2427
>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical protein
F48E3.8b protein.
Length = 1299
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = -3
Query: 484 DVYFVTMTQVIQWVQNPRTVTEAKNFEPWREKCSV--EGNPACWVPHSCKLTSKEVPGET 311
DV+ VT +Q+I +++NP + K+ W+ K + E NP C P +C + +
Sbjct: 1225 DVFVVTGSQIIDYMRNPVDLNNIKSLRSWQCKPQMKDEANP-CENPTTCSFSGRARGQFA 1283
Query: 310 INLQTCLRCPVNYPWL 263
+ + C CP +YPW+
Sbjct: 1284 HSFRMCGVCPKSYPWI 1299
>AC006709-1|AAF60432.2| 256|Caenorhabditis elegans Hypothetical
protein Y119C1A.1 protein.
Length = 256
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 436 PRTVTEAKNFEPWR-EKCSVEGNPACWVPHSCKLTSKEVPGETINLQTCLRC 284
PR++++ + PW ++CS E N + H C+L S+ I+ C C
Sbjct: 198 PRSISQENSTGPWICDRCSRENNSNSYRCHHCQLPSRRFDPSEIDFCGCEYC 249
>AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical
protein H24G06.1d protein.
Length = 669
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = -1
Query: 438 THVP*LKPRTSSRGEKSAPSKETLHAGYLIPASSLQRKFPEKPSI 304
TH P L PRT+SR +APS++ L + +S +RK ++ S+
Sbjct: 104 THPPPLAPRTTSRVLSTAPSQQALQ--QIQASSPFRRKSMDRNSL 146
>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
protein H24G06.1b protein.
Length = 1601
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = -1
Query: 438 THVP*LKPRTSSRGEKSAPSKETLHAGYLIPASSLQRKFPEKPSI 304
TH P L PRT+SR +APS++ L + +S +RK ++ S+
Sbjct: 1036 THPPPLAPRTTSRVLSTAPSQQALQ--QIQASSPFRRKSMDRNSL 1078
>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
protein H24G06.1a protein.
Length = 1680
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = -1
Query: 438 THVP*LKPRTSSRGEKSAPSKETLHAGYLIPASSLQRKFPEKPSI 304
TH P L PRT+SR +APS++ L + +S +RK ++ S+
Sbjct: 1036 THPPPLAPRTTSRVLSTAPSQQALQ--QIQASSPFRRKSMDRNSL 1078
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 355 PHSCKLTSKEVPGETINLQTCLRCPVNYPWLNDP 254
P +C+ T EV T+ Q + P +YP L DP
Sbjct: 295 PTNCRNTCNEVCAPTVASQPSTQAPQSYPVLLDP 328
>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
F54E4.1 protein.
Length = 2948
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -1
Query: 414 RTSSRGEKSAPSKETLHAGYLIPASSLQRKFPEKPSI 304
+ S+ + S PS E LH+ ++ P ++ + F EKPS+
Sbjct: 2391 KLSTASKDSLPS-EALHSKWVPPQKNIVQLFAEKPSV 2426
>AC006605-8|AAK85439.2| 741|Caenorhabditis elegans Ligase protein 4
protein.
Length = 741
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 433 RTVTEAKNFEPWREKCS 383
+ T KNFE W+EKCS
Sbjct: 26 KQATFQKNFESWKEKCS 42
>Z50005-1|CAA90294.1| 334|Caenorhabditis elegans Hypothetical
protein F16H9.2 protein.
Length = 334
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 589 RAPLGLYFHAAWLKNNPEFLEAFLYWIDEILQSHNDV-YFVTMTQVIQWVQNPRTV 425
R+ L Y A+ +N P L+ + + ++H+D+ + T+ Q Q + P V
Sbjct: 270 RSALFQYCSTAYQRNGPSRFNDLLFLLHVVTKTHDDIKKYFTLFQFFQPTEQPSQV 325
>U67954-8|AAB52608.2| 782|Caenorhabditis elegans Sulfate permease
family protein 3 protein.
Length = 782
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -3
Query: 511 IDEILQSHNDVYFVTMTQVIQWVQNPRTVTEAKNFEPWRE 392
+DE+L N+ ++ T ++Q + N + E E W E
Sbjct: 149 LDELLDKENETALISNTTLMQILGNETSFVEEVTMEMWTE 188
>AY954524-1|AAX34432.2| 762|Caenorhabditis elegans anion
transporter SULP-3b protein.
Length = 762
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -3
Query: 511 IDEILQSHNDVYFVTMTQVIQWVQNPRTVTEAKNFEPWRE 392
+DE+L N+ ++ T ++Q + N + E E W E
Sbjct: 149 LDELLDKENETALISNTTLMQILGNETSFVEEVTMEMWTE 188
>AY887909-1|AAX34421.1| 782|Caenorhabditis elegans anion
transporter SULP-3a protein.
Length = 782
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -3
Query: 511 IDEILQSHNDVYFVTMTQVIQWVQNPRTVTEAKNFEPWRE 392
+DE+L N+ ++ T ++Q + N + E E W E
Sbjct: 149 LDELLDKENETALISNTTLMQILGNETSFVEEVTMEMWTE 188
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,585,118
Number of Sequences: 27780
Number of extensions: 352260
Number of successful extensions: 997
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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