Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_P15
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0121 + 14977645-14977734,14978975-14979062,14979271-14979617     29   2.2  
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293     28   5.2  
05_01_0427 + 3374193-3374535,3374632-3374769,3375077-3375201,337...    28   5.2  

>10_08_0121 + 14977645-14977734,14978975-14979062,14979271-14979617
          Length = 174

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
 Frame = -3

Query: 616 DSRVSRCTVCMRQWASQTYSTATRTGDVSFVPNAQRRPFR------GPSPTGRVPRWHRR 455
           ++ ++ C VC +Q     Y     +GD + V   + RP R      G   + +  RWHRR
Sbjct: 20  ENSITSCVVCTQQGG---YPDLRGSGDGAAVAAMRARPSRAVADDGGRDSSNKRRRWHRR 76

Query: 454 GYRVASRKVPSFNKH 410
             +V+S      NKH
Sbjct: 77  HKQVSSTGYDG-NKH 90


>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
          Length = 352

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 502 FRGPSPTGRVPRWHRRGYRVASRKVPSFNK 413
           ++G +P G    W    YR+ S+ +P  NK
Sbjct: 132 YKGRAPRGEKTNWVMHEYRLHSKSIPKSNK 161


>05_01_0427 +
           3374193-3374535,3374632-3374769,3375077-3375201,
           3375776-3376045,3376125-3376255,3377005-3377212,
           3377301-3377366,3377456-3377533,3378426-3378482
          Length = 471

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = -3

Query: 556 TATRTGDVSFVPNAQRRPFRGPSPTGRVPRWHRRGYRVASRKVPSFNK 413
           T T TG+   +    RRP   P P    PR  R    +A RKV    K
Sbjct: 76  TTTTTGEPGTLA---RRPIHPPQPHSTAPRIGRESSWIAQRKVDRLRK 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,211,027
Number of Sequences: 37544
Number of extensions: 265291
Number of successful extensions: 581
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)