Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_P09
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    25   6.9  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    25   6.9  

>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
 Frame = +3

Query: 435 STTRRAMTCDTA-----RGTLRGRAVNNDLCG*TQRTSGDDRYSSTFKRDKFLLTHILSS 599
           S+  +++T D A     + T+R   +N+ L   TQR+S +  Y+S    DK L +  ++ 
Sbjct: 376 SSYHKSLTSDFAMKHYIKSTIRSMLLNDKLSA-TQRSSLESFYTSFISLDKNLSSKFVNQ 434

Query: 600 LNIDTXI 620
           +  D  +
Sbjct: 435 ITPDNRL 441


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 291 RDLYWLFVSIICYIIV 338
           R LYW+FV++ C  ++
Sbjct: 135 RILYWIFVAVACIFVI 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,193,134
Number of Sequences: 5004
Number of extensions: 39457
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)