Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_P09
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0064 + 6485145-6487884,6487900-6488247,6488343-6488722           31   0.58 
12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561     28   5.4  
05_01_0315 - 2468267-2468293,2469021-2469070,2469159-2469234,246...    27   9.4  

>02_02_0064 + 6485145-6487884,6487900-6488247,6488343-6488722
          Length = 1155

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +3

Query: 405 LPSWADWLTNSTTRRAMTCDTARGTLRGRAVNNDLCG 515
           L SW D  T     R ++C  A G  RGR V  DL G
Sbjct: 69  LESWGDGSTPLCRWRGVSCGVAAGRRRGRVVALDLAG 105


>12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561
          Length = 495

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -3

Query: 530 GTLGLSTEVIVHRSPPECSPSCVTCHCSSCGTIC*P--ICPRWQKTLRKCTYLF 375
           G +  ST+     SP   SPS  T  C+ CG +  P  +   W + +R   +LF
Sbjct: 33  GIIPSSTKCATRPSPFSLSPSISTPGCARCGDVGCPYRLDQPWTQKVRNPPHLF 86


>05_01_0315 -
           2468267-2468293,2469021-2469070,2469159-2469234,
           2469498-2469575,2469967-2470048,2470146-2470238,
           2470564-2470673,2470831-2470893,2471293-2471344,
           2471421-2471545,2472681-2472794,2472917-2472961,
           2473278-2473337,2474725-2474778,2474944-2474992,
           2475071-2475252,2475349-2475404,2475491-2475584
          Length = 469

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +3

Query: 261 RYCFNLFILGRDLYWLFVSI--ICYI 332
           RYC++L   G  L WL +S+  +CY+
Sbjct: 82  RYCYSLKGRGASLVWLLLSVTYLCYL 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,359,344
Number of Sequences: 37544
Number of extensions: 236477
Number of successful extensions: 542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)