Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_P08
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       29   0.47 
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    25   7.6  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   7.6  

>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 104

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -1

Query: 264 VIEKANETTLYRPNKRKREREHALVLLTSLPCIICKRYN 148
           V +  + TT++   +++  R H  ++   + C IC +YN
Sbjct: 28  VYDSDSPTTVHHDERKESWRSHGFIVCLHIRCCICCKYN 66


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 560 NSLLISLIDMNALLQSTNHRRFRLKIVTSSL 652
           N L   L+D   LL ST H+   LK V  S+
Sbjct: 141 NQLKKQLVDAETLLSSTQHQLTELKDVMHSM 171


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -1

Query: 672 SLTINDNSDDVTIFKRNRLWLVD 604
           SLTIN+NSDD  + + ++L +VD
Sbjct: 307 SLTINNNSDD--LLRASKLHMVD 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,124
Number of Sequences: 5004
Number of extensions: 52405
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)