Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_P08
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1101 + 30903578-30903988,30904693-30905655                       30   1.5  
02_02_0316 - 8878540-8878605,8880040-8880732,8881270-8881758           30   1.5  

>04_04_1101 + 30903578-30903988,30904693-30905655
          Length = 457

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 362 AWLLRSKNRQGGGTYPHGPTIPS 430
           AW   +++  GGGT P  PTIPS
Sbjct: 168 AWAAAARDGHGGGTAPPPPTIPS 190


>02_02_0316 - 8878540-8878605,8880040-8880732,8881270-8881758
          Length = 415

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -1

Query: 255 KANETTLYRPNKRKREREHALVLLTSLPCIICKRYNRAA 139
           K +  T+ R N+RK+  EH  VL + +PC   KR ++A+
Sbjct: 131 KMSHITVER-NRRKQMNEHLAVLRSLMPCFYVKRGDQAS 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,300,600
Number of Sequences: 37544
Number of extensions: 312750
Number of successful extensions: 557
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)