Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_P08
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68333-2|CAA92722.1|  149|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U80843-14|AAB37960.2|  360|Caenorhabditis elegans Hypothetical p...    27   9.3  

>Z68333-2|CAA92722.1|  149|Caenorhabditis elegans Hypothetical
           protein C05C12.5 protein.
          Length = 149

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -3

Query: 421 CRPV-RVGTTTLSIFAA*QPCASFEGSVNHLEVKSSSFRVVDSPVDSVMQKSYSNR 257
           C P  R+    LS ++     A+   SVNH++VKS S+  +D     +M    S R
Sbjct: 62  CSPEPRIVAPQLSAYSG--SSAASSSSVNHIDVKSKSYLALDKKKALIMTSLKSKR 115


>U80843-14|AAB37960.2|  360|Caenorhabditis elegans Hypothetical
           protein C32B5.4 protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/38 (26%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -1

Query: 672 SLTINDNSDDVTIFKRNRLWLVDCN-NAFISISEISKE 562
           ++T+N ++  +T+F  N+++  D N NA   + E+ ++
Sbjct: 54  TITVNQSTYQLTVFAENKVYQFDINQNAMQDLGEVEED 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,532,719
Number of Sequences: 27780
Number of extensions: 287385
Number of successful extensions: 614
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)