Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_P08
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    27   0.16 
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   2.0  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 404 YPHGPTIPSASFNFSNITYPGSL 472
           YP+G    + S N SNIT+PG L
Sbjct: 379 YPNGTEKMTLSVNESNITWPGRL 401


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 669 LTINDNSDDVTIFKRNRLWLVDCNNAFISISEISKEFHHYSSFM 538
           LT  +++   T     R WL+DC N   ++ +++ E +  S F+
Sbjct: 101 LTFVNDTVSFTTTVSARFWLMDCRN-IGAVPKMATELYEESLFV 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,866
Number of Sequences: 438
Number of extensions: 3626
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)