Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_P07
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0369 + 7843364-7843631,7844994-7845053,7845659-7845741,784...    34   0.15 
12_02_0223 + 15868889-15869182                                         29   5.5  
02_02_0540 - 11334744-11334832,11335445-11335494,11335574-11336805     29   5.5  
11_06_0701 + 26407055-26407597,26407794-26409644                       28   7.3  
06_02_0277 + 13682770-13682845,13683839-13683882,13684344-136844...    28   7.3  
10_07_0135 + 13308839-13308899,13310146-13310495,13310574-133107...    28   9.7  
03_01_0227 - 1797353-1798519                                           28   9.7  

>03_02_0369 +
           7843364-7843631,7844994-7845053,7845659-7845741,
           7845834-7845898,7845965-7845998,7846102-7846172,
           7850409-7850532,7851151-7851268,7851803-7851889,
           7851972-7852055,7852127-7852209,7852556-7852624
          Length = 381

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 21/81 (25%), Positives = 41/81 (50%)
 Frame = -1

Query: 570 FVIDGSILSEKSNKFNSKREVYHCSRCLAWLGLKIKDTVRLYNSEVKVHNNEKEVHIFSY 391
           F   G    +  NK N+K ++    +   WLG +IK+  R+  +E    N + E+ I S 
Sbjct: 96  FARSGGAGGQNVNKVNTKVDMRFNVKEAQWLGERIKE--RILQTEKNRINKDGELVISST 153

Query: 390 ENQPENIHVNDFIQTIESITE 328
           + + +  ++ D +Q I++I +
Sbjct: 154 KTRTQKGNIEDALQKIQAIID 174


>12_02_0223 + 15868889-15869182
          Length = 97

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 768 KIVCSNCSNVLSDGCVKFDRILELPSANLD 679
           K+ CSNC ++ +  CV  D I +L +   D
Sbjct: 37  KMFCSNCDDICNASCVNSDTIAKLCAPQCD 66


>02_02_0540 - 11334744-11334832,11335445-11335494,11335574-11336805
          Length = 456

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 80  LIRRALRTCSVKASNICKKWHR 15
           L+R AL  C V+AS +CK W R
Sbjct: 50  LVRVALPHCLVRASLVCKSWLR 71


>11_06_0701 + 26407055-26407597,26407794-26409644
          Length = 797

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +3

Query: 618 HLPHFHGRVHDCVHDRTILSCPN*LKAILKSCRI*HIHQIKHLNSLSKQFSILH 779
           HL H H  + D   DRT +SC       LK+ ++ H+H+ K L+SL    + L+
Sbjct: 447 HLIHLH--LLDL--DRTCISCLPESIGALKNLQMLHLHRCKSLHSLPTAITQLY 496


>06_02_0277 +
           13682770-13682845,13683839-13683882,13684344-13684437,
           13684494-13684507
          Length = 75

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 29  CKCSMPSLNMFLXLSVLTTTGSVNQFSTSSF 121
           C  S+   +MF+ L VL  + S N FSTS F
Sbjct: 4   CPSSLAPTSMFIILLVLLASKSGNLFSTSCF 34


>10_07_0135 +
           13308839-13308899,13310146-13310495,13310574-13310709,
           13310806-13310942,13311041-13311164,13313393-13313871
          Length = 428

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
 Frame = -1

Query: 327 DFKIGFQYA-----VMCKIVLECTISAAKKQYLLIWIMDKELQVLKNKENVTNNKIELK 166
           D K+G QY       +  I L+C  S AK +  +  +++K  Q+   K NVT+ +++ +
Sbjct: 325 DMKLGGQYPKKGAHAIATIALQCIRSEAKMRPQMSEVLEKLQQLQDPKYNVTSPQVDTR 383


>03_01_0227 - 1797353-1798519
          Length = 388

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -1

Query: 342 ESITEDFKIGFQYAVMCKIV--LECTISAAKKQYLLIWIMDKELQVLKNKENV 190
           E + +DF  G +YAV   +V   E      K +YL+ W+ D E    +  ENV
Sbjct: 308 EDLVKDFDAGLEYAVAEAVVNKREAAEGEGKWEYLVKWV-DIEEATWEPAENV 359


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,534,545
Number of Sequences: 37544
Number of extensions: 349476
Number of successful extensions: 919
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)