Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_P06
         (606 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    23   2.0  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   6.1  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   6.1  

>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 466 FFINWSSIVF*ESDFLAQF 410
           +F N+ +I+F  SDF  QF
Sbjct: 67  YFFNFWTILFSRSDFFQQF 85


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 447 VLYFEKVTFSPNSAI 403
           +LYF ++ F  NSA+
Sbjct: 334 ILYFSRIMFHINSAV 348


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 359 PTNSFEWLYFSILTIIAELGEKVTFSKYNT*P 454
           PTN F +     + + A   EK+T  K N  P
Sbjct: 164 PTNVFTFPETQFIAVTAYQNEKITKLKINYNP 195


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,695
Number of Sequences: 336
Number of extensions: 2517
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)