Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_P06
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    28   0.92 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    25   8.6  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   8.6  

>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 309 KNDISNHRPKELVRMLSLQIRSNGFISPF*LLLLNW 416
           KN  +++RP  L   LS+Q+ ++    PF  LL NW
Sbjct: 42  KNYRASNRPFGLSTGLSVQLNASNMTDPFKFLLDNW 77


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -1

Query: 552 VFVGNLGSKTITADLSTMFYG-GKV--IAGTNSSLIGQVLYFEKVTFS 418
           VFVGNL       DLST F G G +  I        G++  F  VTFS
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFS 415


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 537 LGSKTITADLSTMFYG 490
           +GSKT+T +LST  YG
Sbjct: 93  IGSKTLTNELSTWSYG 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,177,495
Number of Sequences: 5004
Number of extensions: 38870
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)