Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_P06
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0760 + 6910325-6910558,6911305-6911455,6911949-6912115,691...    28   5.0  
06_03_1339 + 29445324-29445395,29445487-29445598,29445673-294457...    28   5.0  
01_01_0042 + 317586-317640,318128-318185,318799-319236,320426-32...    28   6.6  
09_06_0050 + 20493063-20493137,20493253-20493347,20493450-204935...    27   8.7  

>12_01_0760 +
           6910325-6910558,6911305-6911455,6911949-6912115,
           6912227-6912309,6912395-6912773
          Length = 337

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 603 EEDLIVIERWYPRRNACVFVGNLGSKTITADLSTMFYGGKVIA 475
           E+DL    R Y      ++  N+G K + A L  M  GG+++A
Sbjct: 203 EQDLEAALRRYFPEGIDIYYENVGGKMLDAVLPNMSLGGRIVA 245


>06_03_1339 +
           29445324-29445395,29445487-29445598,29445673-29445756,
           29446156-29446182,29446879-29446966,29447070-29447151,
           29447414-29447434,29448412-29448605,29449419-29449560,
           29449805-29449889,29450123-29450250,29450940-29451032,
           29451095-29451327,29453384-29453564,29454122-29454169
          Length = 529

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -2

Query: 236 LFCFKILLMLLTLK*RIIQSFSFEFLYFSI 147
           L C+ ++L +LT+K +I+    ++++ FSI
Sbjct: 482 LLCYWVVLFVLTMKRQIVHMIKYKYVPFSI 511


>01_01_0042 +
           317586-317640,318128-318185,318799-319236,320426-320467,
           320468-320648,320838-320867
          Length = 267

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = -2

Query: 236 LFCFKILLMLLTLK*RIIQSFSFEFLYFSI 147
           L C+ ++L +LT+K +I+    ++++ FS+
Sbjct: 226 LLCYWVVLFVLTMKRQIVHMIKYKYVPFSV 255


>09_06_0050 +
           20493063-20493137,20493253-20493347,20493450-20493547,
           20493684-20493842,20493944-20494055,20494185-20494728,
           20494818-20494915,20494990-20495229,20495312-20495426,
           20495528-20495732,20495805-20496373
          Length = 769

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 525 TITADLSTMFYGGKVIAGTNSSLIGQVLYFEK 430
           T+ A      +  K+I G NS+ +GQ LY  K
Sbjct: 338 TVAAGTIDRIFLAKIILGNNSTYVGQTLYSGK 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,207,058
Number of Sequences: 37544
Number of extensions: 192592
Number of successful extensions: 345
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)