Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_P05
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0933 + 32846658-32846729,32847038-32847133,32847243-328474...    31   0.71 
06_01_0362 - 2587112-2587774                                           29   2.9  
06_01_0908 - 7006160-7007488                                           28   8.8  

>02_05_0933 +
           32846658-32846729,32847038-32847133,32847243-32847411,
           32847608-32847669,32848364-32849320,32850036-32850119,
           32850307-32850595,32850645-32850694
          Length = 592

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 495 NDAPSRRQDGSEGAHHRSLNLSGSVSCVAVASRVGVAVWSALRRLPRAS 641
           +D P  ++ G    HHR+  L   V  V   +R G   WS +RRL  +S
Sbjct: 511 DDNPKTKRGGKR-KHHRAWTLCEVVKLVDGVARYGAGKWSEIRRLAFSS 558


>06_01_0362 - 2587112-2587774
          Length = 220

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 504 PSRRQDGSEGAHHRSLNLSGSVSCVAVASRVGVAVWSALRRLPRASCP 647
           P    DG     H ++ LS  V+CVA    +  ++ SA  R P+A  P
Sbjct: 6   PPSPPDGEHSFGHEAIALSFFVACVAATVVMASSMCSACGRKPKADDP 53


>06_01_0908 - 7006160-7007488
          Length = 442

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = +3

Query: 486 VEWNDAPSRRQDGSEGAHHRSLNLSGSVSCVAVASRVGVAVWS--ALRRLPRASCPPGTR 659
           V+   A   R DG  G HHR      +  C+ +     + +W+   LRRL   S P   R
Sbjct: 383 VDVTPAMMARADGHPGEHHRRWRGRNANDCLHLCLPGPINMWNDVLLRRLAELSPPSDAR 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,249,555
Number of Sequences: 37544
Number of extensions: 242336
Number of successful extensions: 440
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)