Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_P01
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    30   0.35 
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    27   2.4  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    27   4.3  
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    26   7.4  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    25   9.8  

>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
 Frame = -2

Query: 634 LKRPEVAQVLDGIALHFYFNDITPPSMATTV--LKDYPDLFLISTEASITETKGVDLGSW 461
           LKR E+ + +DG+ + F   ++  P+    +   +++ DLF+  T  ++ E       S 
Sbjct: 10  LKRAEILECIDGLGIPFTAKELDQPTSKAVIPLYEEFLDLFMGLTRQNLEEKVNSLQDSV 69

Query: 460 DGLEKYAVSLIQDLSYNYTGWIDWNLC 380
           +  E    SL   + Y        N+C
Sbjct: 70  ENFEIIHESLRFTVFYQILSQFMQNIC 96


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 493 TETKGVDLGSWDGLEKYAVSLIQDLSYNY 407
           T  +GV  G W+  EK A  L +DL  NY
Sbjct: 197 TRLRGVTDGVWNAFEKLAGLLEEDLCANY 225


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 365 WSKLGQKLCRLADRCRRGGRCLLQAADIL 279
           W+K+G+K+ R+ + CR   R +++  D L
Sbjct: 335 WTKIGRKMARMPNDCRDRWRDVVRFGDKL 363


>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +3

Query: 177 KKATCFKAFEQLYFSVDLILLE 242
           + A+C++  +++ FS+D+ LLE
Sbjct: 288 RNASCYRIKDEMIFSIDISLLE 309


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/54 (24%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = -2

Query: 205 SNALKHVAFLTPENTIVVVLLNEDNKDRVIRLKFGDN--QAKVLVEGKSIITVE 50
           S+++ ++    P+NT  +  + E N ++ ++ +F DN  + + +   KS I++E
Sbjct: 11  SDSIVNMELTNPDNTTTMHPIYETNIEKEVQQEFSDNVSEKETIDSTKSKISLE 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,284,318
Number of Sequences: 5004
Number of extensions: 69646
Number of successful extensions: 182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)