Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_P01
         (821 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0911 + 25889333-25889597,25891464-25892038,25892201-258925...    33   0.36 
02_01_0626 - 4694150-4694356,4694443-4694556,4694581-4694991,469...    32   0.48 
09_04_0517 - 18253325-18253870,18254209-18254781,18254888-182551...    32   0.63 
06_01_0551 + 3930456-3930708,3932103-3932677,3932819-3933198,393...    31   0.84 
07_03_1330 + 25848372-25849157                                         31   1.5  
02_05_1116 - 34229234-34229440,34229534-34229593,34229663-342300...    31   1.5  

>06_03_0911 +
           25889333-25889597,25891464-25892038,25892201-25892580,
           25892667-25892753,25892812-25893181,25893352-25893762,
           25893845-25893904,25894013-25894219
          Length = 784

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 22/58 (37%), Positives = 28/58 (48%)
 Frame = -2

Query: 661 LPIWFTAVMLKRPEVAQVLDGIALHFYFNDITPPSMATTVLKDYPDLFLISTEASITE 488
           LP WF+A+ +K    A +     +   FN I P  M  T   DY     IST+ASI E
Sbjct: 603 LPYWFSAMTMKSVGSAALKMVEEVRRQFNSI-PGLMEGTTKPDYATCVKISTDASIKE 659


>02_01_0626 -
           4694150-4694356,4694443-4694556,4694581-4694991,
           4695252-4695582,4695667-4695753,4695839-4696218,
           4696360-4696934,4699036-4699207,4699832-4699846
          Length = 763

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 22/58 (37%), Positives = 28/58 (48%)
 Frame = -2

Query: 661 LPIWFTAVMLKRPEVAQVLDGIALHFYFNDITPPSMATTVLKDYPDLFLISTEASITE 488
           LP WF+A+ +K    A +     +   FN I P  M  T   DY     IST+ASI E
Sbjct: 564 LPYWFSAMTMKSVGSAALKMVEEVRRQFNTI-PGLMEGTTKPDYATCVKISTDASIKE 620


>09_04_0517 -
           18253325-18253870,18254209-18254781,18254888-18255100,
           18255554-18255685,18255804-18255944,18256104-18256325
          Length = 608

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
 Frame = -2

Query: 760 EGMGSWIVDYXGPTIKNYDPTIKIL-------GIDDQRNTLPIWFTAVMLKRPE 620
           +G   W  D+   T+KN+ P ++IL        IDD RN LP        KRP+
Sbjct: 102 KGFDEWNSDF---TLKNHQPIVQILIDGKNRNAIDDDRNVLPTMVYVAREKRPQ 152


>06_01_0551 +
           3930456-3930708,3932103-3932677,3932819-3933198,
           3933301-3933387,3933473-3933803,3933936-3934346,
           3934430-3934489,3934586-3934792
          Length = 767

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 22/58 (37%), Positives = 28/58 (48%)
 Frame = -2

Query: 661 LPIWFTAVMLKRPEVAQVLDGIALHFYFNDITPPSMATTVLKDYPDLFLISTEASITE 488
           LP WF+A+ +K    A +     +   FN I P  M  T   DY     IST+ASI E
Sbjct: 586 LPYWFSAMTMKSVGSAALKMVEEVRRQFNSI-PGLMEGTGKPDYATCVKISTDASIKE 642


>07_03_1330 + 25848372-25849157
          Length = 261

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = -2

Query: 220 EKYNCSNALKHVAFLTPENTIVVVLLNEDNKDRVIRLKFGDNQAKVLVEGKSIITVEFNN 41
           E+   + AL+H  F +PE  +  V   E++  R+I LK  D +   + E  + ++    N
Sbjct: 53  EEVAVTEALEHPVFDSPEKVVPEVAEEEESGGRMITLKSLDGKTVKVKEASARLSETIGN 112

Query: 40  EVQD 29
            + D
Sbjct: 113 LIDD 116


>02_05_1116 -
           34229234-34229440,34229534-34229593,34229663-34230073,
           34230357-34230687,34230781-34230867,34230952-34231331,
           34231531-34232105,34233035-34233272
          Length = 762

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 21/58 (36%), Positives = 29/58 (50%)
 Frame = -2

Query: 661 LPIWFTAVMLKRPEVAQVLDGIALHFYFNDITPPSMATTVLKDYPDLFLISTEASITE 488
           LP WF+A+ +K    A +     +   FN I P  M  T   DY +   IST+ASI +
Sbjct: 581 LPYWFSAMTMKSVGSAALKMVEEVRRQFNTI-PGLMEGTGKPDYANCVKISTDASIKQ 637


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,159,850
Number of Sequences: 37544
Number of extensions: 443770
Number of successful extensions: 960
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)