Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_O19
         (347 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    27   0.83 
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    25   2.5  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    25   4.4  
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    24   7.8  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    24   7.8  

>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 27.1 bits (57), Expect = 0.83
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 105 RQNSQEVSRRNMQSTQQVKYMQRQLGR 185
           +Q +Q+  + N  S QQ++Y+  +LG+
Sbjct: 541 KQRNQKFLKNNATSIQQIQYLDEELGK 567


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
          role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 37 SHSKSPFGCQSAHAVSVWGRV 99
          ++SKSPFG   +  +S W R+
Sbjct: 32 NNSKSPFGLNPSSRISQWPRI 52


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 33  SIAFKIAFWLSISARSXCXGPSRCRQNSQEVSRRNMQSTQQVKYMQRQLGRCRQ 194
           +I  KI   L+I  RS        R  S+ +SRR  +  Q++   QR+L    Q
Sbjct: 194 AIREKIGRELNIPERSVTIWFQNRRAKSKLISRRQEEERQRILREQRELDSLNQ 247


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 279 WTRTTKYYSQNADAQSSAGRIHL 347
           WT   K  ++NAD  SS+GRI L
Sbjct: 118 WTPVIK--AENADQLSSSGRIEL 138


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 99  RCRQNSQEVSRRNMQSTQQVKYMQRQLG 182
           +C QN+  +S  N        Y+Q QLG
Sbjct: 97  KCYQNALAISPNNESLWYDAAYLQAQLG 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,021,514
Number of Sequences: 5004
Number of extensions: 15505
Number of successful extensions: 40
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)