Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_O19
         (347 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0205 - 16411707-16412759,16413077-16413256,16413960-164144...    30   0.43 
06_03_0551 - 22027441-22028224,22029015-22029344,22029510-220297...    29   1.0  
04_03_0825 - 20092781-20092801,20092844-20093079,20093166-200932...    29   1.0  
06_03_0939 + 26131405-26131596,26132753-26133166                       27   4.0  
01_01_0379 - 2956396-2957409                                           27   5.3  
02_03_0214 + 16504237-16504251,16504447-16505055                       26   7.1  
06_03_1473 - 30382528-30382731,30382814-30382930,30383048-303831...    26   9.3  
06_03_0564 + 22218955-22219060,22219184-22219293,22222363-22223682     26   9.3  
04_02_0010 + 8486571-8486848,8489354-8489456,8490139-8490303,849...    26   9.3  

>02_03_0205 -
           16411707-16412759,16413077-16413256,16413960-16414498,
           16414798-16414825
          Length = 599

 Score = 30.3 bits (65), Expect = 0.43
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +1

Query: 19  HIIEIQSHSKSPFGCQSAHAVSVWGRVGVGR 111
           H+I++ S +     C++ H +S+WG +G+G+
Sbjct: 30  HLIQLVSQN-----CENHHIISIWGMIGIGK 55


>06_03_0551 -
           22027441-22028224,22029015-22029344,22029510-22029778,
           22030530-22031453,22037761-22038360,22040049-22040267
          Length = 1041

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 13  VYHIIEIQSHSKSPFGCQSAHAVSVWGRVGVGRIA 117
           ++++I+ +SH+ +P      H VSVWG  G GR A
Sbjct: 111 LFNLIKDRSHTNTP------HVVSVWGIPGTGRTA 139


>04_03_0825 -
           20092781-20092801,20092844-20093079,20093166-20093244,
           20093344-20093482,20093533-20093624,20093714-20093830,
           20093930-20094041,20094154-20094260,20094351-20094427,
           20094517-20094598,20094702-20094839,20095495-20095608
          Length = 437

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 118 WLFCLHLLGPXHXLRALIDNQKAILNAI 35
           WL C+HL  P   L  L+D+  A L AI
Sbjct: 26  WLTCVHLFMPEMPLMILVDDAGAFLPAI 53


>06_03_0939 + 26131405-26131596,26132753-26133166
          Length = 201

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 48  IAFWLSISARSXCXGPSRCRQNSQEVSRRNMQSTQQVKYMQR 173
           +A+W ++S R  C   + C    QEV+  + QS  +++   R
Sbjct: 61  VAWWKAVSERGDCTYGTTCLFVPQEVTGGSPQSISRIRVAAR 102


>01_01_0379 - 2956396-2957409
          Length = 337

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -2

Query: 184 RPSCRCIYFTCCVLCIFRLLTSWLFCLHLLGPXHXLRALIDNQKAILN 41
           +PS  C    CC      L    L   + LGP H L A ID+  A+L+
Sbjct: 98  KPSFHC----CCQRLASELRAVVLSADYRLGPEHRLPAAIDDGAAVLS 141


>02_03_0214 + 16504237-16504251,16504447-16505055
          Length = 207

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 64  QSAHAVSVWGRVGVGR 111
           ++ H +S+WG +GVG+
Sbjct: 39  ENHHIISIWGMIGVGK 54


>06_03_1473 -
           30382528-30382731,30382814-30382930,30383048-30383129,
           30383211-30383278,30383444-30383545,30383994-30384122,
           30384561-30384623,30384781-30384897,30385210-30386116,
           30386225-30386494,30386929-30386998,30387114-30387273
          Length = 762

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 345 NEFGRPMIVHRHFENNTWSYE 283
           NEFG P  +    E N WSY+
Sbjct: 528 NEFGHPEWIDFPREGNNWSYD 548


>06_03_0564 + 22218955-22219060,22219184-22219293,22222363-22223682
          Length = 511

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 196 SCLHRPSCRCIYFTCCVLCIFRLL 125
           S  H    +C+++ CCVL +  +L
Sbjct: 164 SGFHHAISKCLFYLCCVLPVLTIL 187


>04_02_0010 +
           8486571-8486848,8489354-8489456,8490139-8490303,
           8490654-8490788
          Length = 226

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 10  VVYHIIEIQSHSKSPFGCQSAHAVS 84
           VV H+  +  HS +   C+S HAV+
Sbjct: 85  VVVHLFPLPYHSNAFISCRSIHAVN 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,742,889
Number of Sequences: 37544
Number of extensions: 114545
Number of successful extensions: 327
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)