Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_O19
         (347 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical pr...    28   2.1  
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    27   3.7  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    26   6.4  
AF045645-5|AAL06039.2|  140|Caenorhabditis elegans Ground-like (...    26   6.4  
Z78410-11|CAB01639.2|  315|Caenorhabditis elegans Hypothetical p...    26   8.5  
U32305-6|AAV58892.1|  411|Caenorhabditis elegans Hypothetical pr...    26   8.5  
U32305-5|AAK18855.2|  501|Caenorhabditis elegans Hypothetical pr...    26   8.5  
AC024756-4|AAX88819.1|  639|Caenorhabditis elegans Hypothetical ...    26   8.5  

>Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical
           protein Y41E3.14 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 172 RCIYFTCCVLCIFRLLTSWLF-CLHLLGP 89
           R I+  CC++C F   T+ ++  L L+ P
Sbjct: 238 RAIFIQCCIICFFNTATALIYNALSLMTP 266


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 12  SVSHNRNSIAFKIAFWLSISARSXCXGPSRCRQNSQEVSR--RNMQSTQQ 155
           SVS + N +      +  +S  S C G  +C  NSQ +S   +  Q TQQ
Sbjct: 381 SVSCSTNQVCISNQCYNYVSIGSQCVGSQQCLSNSQCISSICQCPQGTQQ 430


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = -2

Query: 235 CVCCRKAFGV*VPSCLHRPSCRCIYFTCCVLC 140
           C CC    G     C  RP C C    CC  C
Sbjct: 77  CGCCGCGCGC----CCCRPRCCCCCRRCCTCC 104


>AF045645-5|AAL06039.2|  140|Caenorhabditis elegans Ground-like (grd
           related) protein26 protein.
          Length = 140

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 166 CSGNWGGVGNWVLIHQRLCGSKRKNSSEQQKFE 264
           C+G +GG G      Q  CG K+++  E ++ E
Sbjct: 23  CAGLFGGGGGGGCCCQSACGRKKRSIDEDERRE 55


>Z78410-11|CAB01639.2|  315|Caenorhabditis elegans Hypothetical
           protein C51E3.4 protein.
          Length = 315

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = -2

Query: 184 RPSCRCIYFTCCVLCIFRLLTSWLFCLHLLG 92
           R  C  +    C+  +  L   +++C+HL G
Sbjct: 41  RSPCHILISLTCICDLLHLCAQFVYCVHLFG 71


>U32305-6|AAV58892.1|  411|Caenorhabditis elegans Hypothetical
           protein B0336.7b protein.
          Length = 411

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 298 YLVVRVHFNQHVQISAVRCYSCVCCRKA 215
           +L    HFN++  ++  + Y+C+ CRKA
Sbjct: 186 HLYYEFHFNRY-GLNNTKFYACLSCRKA 212


>U32305-5|AAK18855.2|  501|Caenorhabditis elegans Hypothetical
           protein B0336.7a protein.
          Length = 501

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 298 YLVVRVHFNQHVQISAVRCYSCVCCRKA 215
           +L    HFN++  ++  + Y+C+ CRKA
Sbjct: 276 HLYYEFHFNRY-GLNNTKFYACLSCRKA 302


>AC024756-4|AAX88819.1|  639|Caenorhabditis elegans Hypothetical
           protein Y34D9A.3 protein.
          Length = 639

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 298 YLVVRVHFNQHVQISAVRCYSCVCCRKAF 212
           Y +++++F    + S + C+SC C +K F
Sbjct: 131 YAILKLYFLCRNRKSKLECFSCGCVQKYF 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,890,298
Number of Sequences: 27780
Number of extensions: 99002
Number of successful extensions: 327
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)