Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_O18
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomy...   183   2e-47
SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||...    29   0.81 
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    27   2.5  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   3.3  
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    25   7.5  

>SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 228

 Score =  183 bits (445), Expect = 2e-47
 Identities = 87/182 (47%), Positives = 124/182 (68%), Gaps = 2/182 (1%)
 Frame = -3

Query: 663 DLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKI--KDAFFETHMMV 490
           D + L +E  ++L  G+D+LH+DVMD QFVPNLT G  VVK +R     ++AFF+ H+MV
Sbjct: 14  DFANLEKEVGRMLKYGSDWLHVDVMDAQFVPNLTIGPIVVKAMRNHYTKEEAFFDCHLMV 73

Query: 489 EKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVSEVEKYIS 310
            +PE++I  +ADAG + + FH E  +   E+  +  E GM VG A+KP TPV  +  ++ 
Sbjct: 74  IEPERYIDQLADAGASLFCFHYEATEKHEEIISRAHEKGMLVGCALKPKTPVEVILPFVE 133

Query: 309 ISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPSTINCCANAGANM 130
             DMVL+MTVEPG GGQ FM   + KV++LR+ YP L++EVDGG+   T++  A+AGAN+
Sbjct: 134 KLDMVLVMTVEPGKGGQSFMPECLPKVEFLRKKYPTLNVEVDGGLSLKTVDAAADAGANV 193

Query: 129 IV 124
           IV
Sbjct: 194 IV 195


>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 327

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 288 MTVEPGFGGQKFMENQMAKV-QYLRENYPLLDIEVDG 181
           + + PG G  ++M+  MAKV +Y R+N   + I+ DG
Sbjct: 116 IVIGPGLGRDEWMQEIMAKVIEYARKNDMPMVIDADG 152


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 619 WSRLFTFRCNGWSVCT 572
           WSR F   C G+SVCT
Sbjct: 6   WSRNFLCSCRGFSVCT 21


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 445 DSSISHWCYPLLWFLNHHVSFKKGIFYFSSKALH 546
           D+ I +  YP    L+ H+S KK I YFS+K  H
Sbjct: 419 DNLIDNLKYPQS--LDDHLSSKKPISYFSNKLTH 450


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 255 FMENQMAKVQYLRENYPLLDIEVDGGVGPSTINCCANAGANMIVXRDSHN 106
           F +   +++Q L+E + LLD + DG +G   +     +  N     DS N
Sbjct: 39  FAQLTSSQIQELKEAFALLDKDGDGNIGREDVKTMLTS-LNQDASEDSIN 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,499
Number of Sequences: 5004
Number of extensions: 56051
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)