Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_O18
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0657 + 19271266-19271388,19271906-19271910,19272005-192720...   194   7e-50
03_01_0485 + 3695857-3695951,3696489-3696597,3696746-3696886,369...   131   4e-31
05_01_0030 + 195663-196691                                             29   4.5  
07_01_0587 - 4362843-4362977,4363072-4363131,4363228-4363305,436...    28   5.9  
03_02_0898 - 12246747-12246833,12247425-12247601,12248054-122481...    28   5.9  

>09_04_0657 +
           19271266-19271388,19271906-19271910,19272005-19272067,
           19272150-19272256,19272321-19272418,19273070-19273162,
           19273279-19273320,19273464-19273619
          Length = 228

 Score =  194 bits (472), Expect = 7e-50
 Identities = 94/188 (50%), Positives = 130/188 (69%), Gaps = 4/188 (2%)
 Frame = -3

Query: 663 DLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKIKDAFFETHMMVEK 484
           D + L  E+ +++  GAD+LH+D+MDG FVPNLT G PV++ LR   K A+ + H+MV  
Sbjct: 17  DFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTK-AYLDCHLMVTN 75

Query: 483 PEQWITPMADAGVNQYTFHIEPVKDVI-EVCRKVREHGMKVGVAIKPGTPVSEVEKYISI 307
           P  ++ P+A AG + +TFHIE  +D   E+ + ++  GM+ GV+++PGTPV EV   +  
Sbjct: 76  PSDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEA 135

Query: 306 S---DMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPSTINCCANAGA 136
               ++VL+MTVEPGFGGQKFM   M KV+ LR+ YP LDIEVDGG+GPSTI+  A+AGA
Sbjct: 136 ENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGA 195

Query: 135 NMIVXRDS 112
           N IV   S
Sbjct: 196 NCIVAGSS 203


>03_01_0485 +
           3695857-3695951,3696489-3696597,3696746-3696886,
           3696986-3697099,3697558-3697636,3698163-3698272,
           3698344-3698400,3698520-3698609
          Length = 264

 Score =  131 bits (317), Expect = 4e-31
 Identities = 72/186 (38%), Positives = 107/186 (57%), Gaps = 6/186 (3%)
 Frame = -3

Query: 663 DLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKIKDAFFETHMMVEK 484
           + S+L E+ + +   G D++H+DVMDG+FVPN+T G  VV  LR  + D   + H+M+ +
Sbjct: 61  NFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIGPLVVDALR-PVTDLPLDVHLMIVE 119

Query: 483 PEQWITPMADAGVNQYTFHIEPVKDVI--EVCRKVREHGMKVGVAIKPGTPVSEVEKYIS 310
           PEQ +     AG +  + H E    +       +++  G K GV + P TP++ ++  + 
Sbjct: 120 PEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATPLTAIDYVLD 179

Query: 309 ISDMVLIMTVEPGFGGQKFMENQMAKVQYLR----ENYPLLDIEVDGGVGPSTINCCANA 142
           + D+VLIM+V PGFGGQ F+E+Q+ K+  LR    E      IEVDGGVGP        A
Sbjct: 180 VVDLVLIMSVNPGFGGQSFIESQVKKIAELRRLCAEKGVNPWIEVDGGVGPKNAYKVIEA 239

Query: 141 GANMIV 124
           GAN IV
Sbjct: 240 GANAIV 245


>05_01_0030 + 195663-196691
          Length = 342

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +2

Query: 266 PNPGSTVIIKTMSDIEIYFSTSETGVPGFIATPTFIPCSLTFLHTSITSLTGSI 427
           P P S   +  ++ + I ++     VP F+A  T    SLT L  S  SLTG I
Sbjct: 118 PIPDSLAALTDLTHLTISWTAVSGPVPSFLANLT----SLTMLDLSFNSLTGLI 167


>07_01_0587 -
           4362843-4362977,4363072-4363131,4363228-4363305,
           4363552-4363629,4363950-4364026,4364416-4364590,
           4364698-4364844,4365477-4365716
          Length = 329

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
 Frame = -3

Query: 474 WITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPGTPVSEVEKYISISDMV 295
           ++T + +AGV+       P+++   +  +  ++ +++ +   P TP   +EK    S+  
Sbjct: 177 FMTVVKEAGVHGLVVPDVPLEETNILRSEAAKNNLELVLLTTPTTPTERMEKITKASEGF 236

Query: 294 LIMTVEPGFGGQKFMENQMAKVQYLRENY-PLLDIEVDGGVGPST 163
           + +    G  G +   N   KVQ L ++   + D  V  G G ST
Sbjct: 237 IYLVSTVGVTGAR--ANVSGKVQSLLQDIKQVTDKAVAVGFGIST 279


>03_02_0898 -
           12246747-12246833,12247425-12247601,12248054-12248176,
           12248545-12248766,12249556-12249606,12249712-12249987
          Length = 311

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/75 (22%), Positives = 34/75 (45%)
 Frame = -3

Query: 336 VSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPSTIN 157
           + E    ++++  +L   V  GF G +   N++ ++  L  +  LLD E+D G+    + 
Sbjct: 188 IEEKVNALNMNAEILNRAVNEGFSGGERKRNEILQLSVLGADLALLD-EIDSGLDVDALE 246

Query: 156 CCANAGANMIVXRDS 112
             A A   ++    S
Sbjct: 247 YVAKAVNGILTPNSS 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,044,505
Number of Sequences: 37544
Number of extensions: 355254
Number of successful extensions: 807
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)