Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_O18
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28991-4|AAK68310.1|  227|Caenorhabditis elegans Hypothetical pr...   218   3e-57
AF068709-13|AAO26012.1|  321|Caenorhabditis elegans Serpentine r...    31   0.75 
Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical pr...    28   6.9  

>U28991-4|AAK68310.1|  227|Caenorhabditis elegans Hypothetical
           protein F08F8.7 protein.
          Length = 227

 Score =  218 bits (533), Expect = 3e-57
 Identities = 107/186 (57%), Positives = 130/186 (69%), Gaps = 4/186 (2%)
 Frame = -3

Query: 669 NXDLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKI-KDAFFETHMM 493
           N DL+ L  E +KLL  GAD+LHLDVMDG FVPNLTFGHPVV+ LR  +  + FF+ H+M
Sbjct: 13  NADLASLASECKKLLAAGADWLHLDVMDGHFVPNLTFGHPVVESLRKSLGAEPFFDVHLM 72

Query: 492 VEKPEQWITPMADAGVNQYTFHIEPVKD---VIEVCRKVREHGMKVGVAIKPGTPVSEVE 322
           V  P QW+ PMA AG +Q+TFH E V     V E+  K+R+ GMKVG+++KPGT V  + 
Sbjct: 73  VSNPGQWVEPMAKAGASQFTFHYEAVDGDVAVSELIEKIRKSGMKVGLSVKPGTSVEHIL 132

Query: 321 KYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPSTINCCANA 142
           K+ +  D  LIMTVEPGFGGQKFMEN M KV+ +R  YP L I+VDGGV P  I   A A
Sbjct: 133 KHANHLDNALIMTVEPGFGGQKFMENMMEKVRTIRSKYPNLTIQVDGGVTPENIEISAQA 192

Query: 141 GANMIV 124
           GAN IV
Sbjct: 193 GANAIV 198


>AF068709-13|AAO26012.1|  321|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 56 protein.
          Length = 321

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 266 PNPGSTVIIKTMSDIEIYFSTSE-TGVPGFIATPTFIPCSLTFLH 397
           P+P +  II +M  +EI FS    TG   F   P+FI  S+ FLH
Sbjct: 5   PSPPAP-IITSMETVEIEFSAKVFTGFQLFYGVPSFIIMSVLFLH 48


>Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical
           protein K08E4.1 protein.
          Length = 1208

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = -3

Query: 453 AGVNQYTFHIEPVKDVIEVCRKVRE 379
           + +NQ+T  + P+KD+++V R V++
Sbjct: 249 SALNQFTITMVPIKDMVDVLRVVKD 273


>Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical
           protein K08E4.1 protein.
          Length = 1208

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = -3

Query: 453 AGVNQYTFHIEPVKDVIEVCRKVRE 379
           + +NQ+T  + P+KD+++V R V++
Sbjct: 249 SALNQFTITMVPIKDMVDVLRVVKD 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,916,821
Number of Sequences: 27780
Number of extensions: 328344
Number of successful extensions: 778
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)