Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_O17
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1408 - 37088014-37088448,37088892-37089167,37090777-37092297     30   1.7  
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19...    28   6.9  

>01_06_1408 - 37088014-37088448,37088892-37089167,37090777-37092297
          Length = 743

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
 Frame = -2

Query: 445 WWCDCSMVHCYFEINSAL*IVRFEGLFK*YKEITPTS-C*HAFVNVNANTKSCRLYLRID 269
           WWCDC++   +   + A     F+ L   Y  +  TS      V+V  N  +    + +D
Sbjct: 51  WWCDCTVCEAFLTASWA---GEFDNLCDWYAHLLRTSPAQTVHVHVLRNVLTAN-PVTVD 106

Query: 268 YQLSSRFQSEKKPVKYHELFARLLFR 191
           + L +RF +  K   +  + A  L R
Sbjct: 107 HVLRARFDNYPKGAPFSAILADFLGR 132


>06_01_0018 +
           194295-194640,194679-194917,195737-195885,196248-196342,
           196685-196780,197248-197399,198683-198823,199068-199319,
           199463-199603,199686-200003,200146-200232,201025-202006,
           202091-202179,202968-203072,203155-204306,204844-205359,
           205455-205650,206299-207182
          Length = 1979

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 5   LLDGNIKSFNPLVSNLVVSPNTNFSFLRQTGFKKSQKS 118
           +LD N+++  P+VS+ ++S   +F F R   F+K   S
Sbjct: 798 ILDSNVQNVMPIVSHSLLSWGASFLFNRLEEFQKHDYS 835


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,742,202
Number of Sequences: 37544
Number of extensions: 300688
Number of successful extensions: 472
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)