Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_O17
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.4  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   5.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.7  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 272 YSQIKPTRFSICINIYKGVSTTGGSYFLIL 361
           YS+  P+   +C N +  +  T GS+++ L
Sbjct: 186 YSETGPSHCVVCQNFFYQIYATLGSFYIPL 215


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 516 RWLIFFLHQIVDDYVLLGNT 457
           +W +  +  I+D Y++L NT
Sbjct: 278 KWFLHKMKNIIDYYLVLENT 297


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 345  VISLYYLNKPSNRTIHNA 398
            ++S YY NKP +  I  A
Sbjct: 948  IVSEYYQNKPISEVIGGA 965


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 387 LCDLRACLSNIRK*LPPVVDTPL 319
           L  +   L  IR+ LPP   TPL
Sbjct: 252 LLSMTVFLMTIRESLPPTEKTPL 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,313
Number of Sequences: 438
Number of extensions: 3439
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)