Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_O15
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69904-5|CAA93778.1|  250|Caenorhabditis elegans Hypothetical pr...   112   2e-25
Z81587-1|CAB04701.1|  340|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z67755-5|CAA91758.2|  966|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AF200199-1|AAF13716.1|  966|Caenorhabditis elegans MES-1 protein.      28   5.2  
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U28733-1|AAA68302.2|  982|Caenorhabditis elegans Patched related...    27   9.1  
AF067211-16|AAC16988.3|  399|Caenorhabditis elegans Hypothetical...    27   9.1  

>Z69904-5|CAA93778.1|  250|Caenorhabditis elegans Hypothetical
           protein ZK20.5 protein.
          Length = 250

 Score =  112 bits (270), Expect = 2e-25
 Identities = 68/216 (31%), Positives = 116/216 (53%), Gaps = 2/216 (0%)
 Frame = -2

Query: 664 NXKTEWAKKPRKLDKCGELLNKIKIALTQLTFLPSNNVAANQKELILA-RDVLEIGAQWA 488
           N    WAK+P+ L         ++ AL +LT + S +   N K+  LA +D+ EI    A
Sbjct: 7   NLLAVWAKEPKDLVA-------VEKALNELTKVLSASSDLNDKQSALASKDLYEISVLLA 59

Query: 487 VAVKDVKAFERYMSQLKCYYFDYKDHLPESAFTNQXXXXXXXXXL-SQNRVAEFHTELER 311
           +   D + F+ Y++Q+  YY       PE++             L + NR+++FH  LE+
Sbjct: 60  ILKHDFETFDDYINQMHTYY----TMAPENSENKHLMTGLHLMFLLAANRLSDFHMLLEQ 115

Query: 310 LPVDVIRTDLYIRHPLALEQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLETVRGEIAAC 131
           +P     ++ YI  P+ +EQ LMEG+YNK+ L + N+P+  YT F+  +L+T+R EIA  
Sbjct: 116 IPQKEQTSNAYISTPVRIEQSLMEGAYNKVVLTEKNIPSPFYTIFIRIMLDTIRREIATS 175

Query: 130 IEKAYHTIPCAEAARRLNLXSQQAVLEYGKKRNWRL 23
           IEK++  +   +A   L   + + + ++G++R W L
Sbjct: 176 IEKSFKVLTAKDATVMLLFDNDEQMKKFGQERKWHL 211


>Z81587-1|CAB04701.1|  340|Caenorhabditis elegans Hypothetical
           protein T06G6.1 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 456 LSKALTSFTATAHCAPISNTSLAKINSFWFAATLLLGRNV--NCVRAIFIL 602
           L+ ALTS T   +CA IS   L      W A   L   N+  N  R I I+
Sbjct: 19  LASALTSVTLKFNCAFISTIVLISYCFSWLAIQALWNNNIFSNSTRLILIV 69


>Z67755-5|CAA91758.2|  966|Caenorhabditis elegans Hypothetical
           protein F54F7.5 protein.
          Length = 966

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 616 GELLNKIKIALTQLTFLPSNNVAANQKELI 527
           G +LN + I     +F+PSNN A + K L+
Sbjct: 107 GTVLNDVFIVCLDTSFMPSNNSAPSAKRLL 136


>AF200199-1|AAF13716.1|  966|Caenorhabditis elegans MES-1 protein.
          Length = 966

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 616 GELLNKIKIALTQLTFLPSNNVAANQKELI 527
           G +LN + I     +F+PSNN A + K L+
Sbjct: 107 GTVLNDVFIVCLDTSFMPSNNSAPSAKRLL 136


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
            K10C2.1 protein.
          Length = 2314

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 413  PPPGVCIHKPTVRIESIIPAFSKP-SGRVSHRT 318
            PPP V    PT  I +++P  S P SG VS  T
Sbjct: 2205 PPPSVATAGPTGPILTVVPVSSAPTSGAVSSTT 2237


>U28733-1|AAA68302.2|  982|Caenorhabditis elegans Patched related
            family protein 6 protein.
          Length = 982

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 656  DRVGKEAKKAGQMWRALKQNKDCSYTVNV 570
            +R+   +KKA    R LK+NK+  Y +N+
Sbjct: 948  ERLSDASKKASDRRRKLKENKNSVYAINL 976


>AF067211-16|AAC16988.3|  399|Caenorhabditis elegans Hypothetical
           protein B0205.4 protein.
          Length = 399

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
 Frame = +2

Query: 428 IITLELRH---VSLESFDVFHG--DGPLCTY---FQYISS--QNQLFLVCCDIITWKKR- 574
           ++ + +RH   +S+ S +  HG  D P+  Y    Q IS   +N  F++C D + W +R 
Sbjct: 258 MVGVHIRHGMDISMNSRNRIHGHVDTPIEYYKRAIQQISKIYENVAFIICSDNVAWARRN 317

Query: 575 -*LCKSNLYF 601
             L K  L+F
Sbjct: 318 LKLGKETLHF 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,864,733
Number of Sequences: 27780
Number of extensions: 305203
Number of successful extensions: 729
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)