Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_O08
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.29 
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              25   0.38 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    24   0.88 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   0.88 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   1.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.0  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 340 CASQCDGISVGLVSAPNLYLCICVRACLCARRPHLPM 230
           CAS+  GI      +PN  + +CV    C RR H P+
Sbjct: 82  CASKYCGIGKECELSPNSTIAVCVCMRKCPRR-HRPV 117


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 203 REKKNHWKIPKKCVFC 156
           R KKN   +P +CVFC
Sbjct: 28  RRKKNKKPLPTECVFC 43


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 301 TRARHLYHHIATHTGRLPF 357
           TR  HL  H+  HTG  P+
Sbjct: 20  TRDHHLKTHMRLHTGEKPY 38


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +3

Query: 156 TEYTFFWDFPMIFFLTYFINIYSVCIGRCGRRAQRHARTHIHKYKLGADTS 308
           T +TF +  PMI  + Y+  I S  +       ++  + ++   +  A+TS
Sbjct: 214 TIFTFSYCIPMILIIYYYSQIVSHVVNHEKALREQAKKMNVDSLRSNANTS 264


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 313 HLYHHIATHTGRLPFVPLQLNFSYIVK--LTEYFKS 414
           HL +H+  H G  PF   + ++S + K  L  + KS
Sbjct: 3   HLEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKS 38


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 305 EPDTYTITLRRTPDVFPLYRYS 370
           EP+    T   TP  FP Y YS
Sbjct: 320 EPNDEVATYDNTPRDFPYYMYS 341



 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 325 HIATHTGRLPFV 360
           H+ THTG  P+V
Sbjct: 194 HMRTHTGEKPYV 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,378
Number of Sequences: 438
Number of extensions: 2265
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)