Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_O02
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    31   0.18 
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    26   5.0  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    26   5.0  
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    26   5.0  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   5.0  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    25   8.8  

>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 220 TGITLSFESTNLQRKSSKADLTFGASVPILTFTSISIIP-PAQPLSIANSDIQGTIVNTP 396
           T I L   ST  Q     ++L     VP  TF+  +++P P+ PL+   S +QG ++N P
Sbjct: 181 TPIQLYDPSTQRQMARPMSNLQASQPVPSSTFSRSAVVPNPSLPLN--PSVLQGQVMNNP 238

Query: 397 LI 402
            I
Sbjct: 239 TI 240


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 251 LVDSNESVIPVLKKAGALKMCRNHRL 174
           ++D   + I  LK   A K+CR HRL
Sbjct: 675 VLDGVRTYIKALKYGDAFKVCRTHRL 700


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 244 STNLQRKSSKADLTFGASVPILTFTSISIIPPAQPLSIANSDIQGT 381
           STNL +K+S +D+    S+P+            +P S AN+    T
Sbjct: 395 STNLPQKTSNSDMPTANSMPVKLENGTDYSTSQEPSSNANNQSSPT 440


>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 515 WDAYNVDESNDPTALVVSMSYKE 447
           +D Y + ES DP A+VV M+Y+E
Sbjct: 128 YDFY-IGESMDPDAMVVLMNYRE 149


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 572 VKKNDFSICRYIQSTIRFLWDAYNVDESNDP 480
           +K +D S+ RY    + +L++  N+ E +DP
Sbjct: 776 LKISDISLFRYFGKPLAYLFNEENLKEESDP 806


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -3

Query: 380 VPWISEFAIESGWAGGIIEMLVKVKIGTLAPNVKSAFEDFLCRLVDSNESV 228
           V + +  A  SG   G +E+ V+  +GT+   + S  E+F   L  ++ S+
Sbjct: 158 VEYNTTLATASGTVPGTVEV-VEPAVGTVTTTIYSGSEEFTTTLASASGSI 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,063,038
Number of Sequences: 5004
Number of extensions: 63584
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)