Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_N24
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.1  
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    26   4.1  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   5.4  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    26   5.4  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   5.4  
SPBC31F10.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   5.4  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   7.1  

>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 57   FVWFSLLLHGRNGRAVVPTRADSQDVLAPV 146
            + W + +LHGRN R V P   DS    +P+
Sbjct: 1286 YTWLTPVLHGRNVRMVEPI-PDSDAASSPI 1314


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -3

Query: 327 NVIRRNHTTPSHNLYFYNFQCSILQTGNHN*FVAVIGKMAVHTRASSQYVLDQKNNNA 154
           N+I +    P H      FQ +     NH  F ++IGK A   + +S+Y  +   N A
Sbjct: 89  NIIFQTAALPEHAA---TFQFASQAYNNHFFFQSLIGKRAADAKKNSKYEANAAINKA 143


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 202 MHRHFAYYCHELVMVTCLKNRTLEVVKIQIVTRCRVVTSDDIDINICITP 351
           M +   +Y  E+  +TCL   T+  +  QIV R       D D   CI P
Sbjct: 820 MRKGSRWYSIEMAGITCLTGATIIQMARQIVERAGRPLELDTDGIWCILP 869


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 368 TRYVLVGVIHILISMSSDVTTRHRVTI 288
           TRYV + ++ ++++   +   RHR TI
Sbjct: 352 TRYVALNMLKLVVNSEENAVQRHRSTI 378


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/75 (21%), Positives = 33/75 (44%)
 Frame = -3

Query: 372 QNTIRLGWSYTYININVIRRNHTTPSHNLYFYNFQCSILQTGNHN*FVAVIGKMAVHTRA 193
           +N +  G+S  + +   +  N         F N+  SIL++ N    + +IG  A+H   
Sbjct: 104 RNLLMKGFSMNHEDFRAMHVNGVQNDLVSTFPNYLISILESKNWQLLLEIIGSDAMHYLL 163

Query: 192 SSQYVLDQKNNNAFI 148
           S   + +   N+ ++
Sbjct: 164 SKGSIFEALPNDNYL 178


>SPBC31F10.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 135

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 61  FGLAYYFTAEMAERWYLPARTHKTS 135
           F  AY F  +    +Y P+RTH +S
Sbjct: 54  FRFAYVFPRKAQNHYYSPSRTHTSS 78


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 117 RG*VPPLCHFCRE 79
           R  +PPLCH CR+
Sbjct: 912 RNIIPPLCHTCRQ 924


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,724
Number of Sequences: 5004
Number of extensions: 54440
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)