Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_N24
(647 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13071-1|AAL65794.1| 462|Caenorhabditis elegans Hypothetical pr... 31 0.53
Z19154-2|CAA79554.1| 504|Caenorhabditis elegans Hypothetical pr... 29 2.8
U41010-2|AAF98588.1| 585|Caenorhabditis elegans Trehalase prote... 29 3.8
AJ512334-1|CAD54508.2| 585|Caenorhabditis elegans trehalase pro... 29 3.8
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 28 5.0
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 28 5.0
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 28 5.0
Z78410-2|CAB01636.2| 327|Caenorhabditis elegans Hypothetical pr... 27 8.7
U88170-10|AAB42242.2| 340|Caenorhabditis elegans Serpentine rec... 27 8.7
>U13071-1|AAL65794.1| 462|Caenorhabditis elegans Hypothetical
protein T22F7.5 protein.
Length = 462
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 211 GGAYPCKLAIRSRPEK**CIYFTGARTSCESARVGTTALPFL 86
GGA C + +R+ PE C G +T C +AR+G P +
Sbjct: 81 GGAQECSVKLRNCPEGYSCQNSKGGKTICCTARIGGRDRPMI 122
>Z19154-2|CAA79554.1| 504|Caenorhabditis elegans Hypothetical
protein C40H1.3 protein.
Length = 504
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +1
Query: 151 KCIIIFLVENVLRACTGMHRHFAYYCHELVMVT-CLKNRTLEVVKIQIVTRCRVVTSDDI 327
+C L E+ L GM +HFA YC + C+K + + ++ RC +
Sbjct: 291 RCPHCQLTESGLGRAGGMEKHFAKYCKVMTSCKYCMKLTMVSQLTDHLIYRCEFLQDTME 350
Query: 328 DINIC 342
N C
Sbjct: 351 ACNDC 355
>U41010-2|AAF98588.1| 585|Caenorhabditis elegans Trehalase protein
2 protein.
Length = 585
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +1
Query: 427 CC--TAVRVVIKAGIGTSTSPWTARHATRELVNAPSVYSLWSVV-DGVV 564
CC T R +IK +S TAR EL PSV SL S++ DG V
Sbjct: 535 CCDVTLSRTLIKPTSPAPSSSSTARLFASELTQTPSVVSLQSMLSDGSV 583
>AJ512334-1|CAD54508.2| 585|Caenorhabditis elegans trehalase
protein.
Length = 585
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +1
Query: 427 CC--TAVRVVIKAGIGTSTSPWTARHATRELVNAPSVYSLWSVV-DGVV 564
CC T R +IK +S TAR EL PSV SL S++ DG V
Sbjct: 535 CCDVTLSRTLIKPTSPAPSSSSTARLFASELTQTPSVVSLQSMLSDGSV 583
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 406 NSNQNRWCCTAVRVVIKAGIGTSTSPWT 489
+++ +WC + V+ AG+G+S SP T
Sbjct: 998 STHMKKWCMELSKAVLLAGLGSSGSPIT 1025
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 406 NSNQNRWCCTAVRVVIKAGIGTSTSPWT 489
+++ +WC + V+ AG+G+S SP T
Sbjct: 1004 STHMKKWCMELSKAVLLAGLGSSGSPIT 1031
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 406 NSNQNRWCCTAVRVVIKAGIGTSTSPWT 489
+++ +WC + V+ AG+G+S SP T
Sbjct: 1004 STHMKKWCMELSKAVLLAGLGSSGSPIT 1031
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 406 NSNQNRWCCTAVRVVIKAGIGTSTSPWT 489
+++ +WC + V+ AG+G+S SP T
Sbjct: 1004 STHMKKWCMELSKAVLLAGLGSSGSPIT 1031
>Z78410-2|CAB01636.2| 327|Caenorhabditis elegans Hypothetical
protein C51E3.2 protein.
Length = 327
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 154 CIIIFLVENVLRA-CTGMHRHFAYYCHELVMVTCL 255
C +I ++ NV+ CT + F CH L+ TC+
Sbjct: 19 CSVIGVIGNVIMVICTIRTKRFRSPCHLLICATCI 53
>U88170-10|AAB42242.2| 340|Caenorhabditis elegans Serpentine
receptor, class h protein50 protein.
Length = 340
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -1
Query: 368 TRYVLVGVIHILISMSSDVTTRHRVTICIFTTSNVLFFKQVTITSS 231
TRY L G+I++ I S + ++ +F + +FFK + I+ S
Sbjct: 280 TRYYLQGLINVCILFISANSAISTFSLLLFNSPYRIFFKNLLISRS 325
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,061,927
Number of Sequences: 27780
Number of extensions: 322039
Number of successful extensions: 784
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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