Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_N21
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    56   5e-09
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    50   3e-07
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    43   4e-05
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    26   6.2  
SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.2  

>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 56.0 bits (129), Expect = 5e-09
 Identities = 52/177 (29%), Positives = 75/177 (42%), Gaps = 6/177 (3%)
 Frame = -2

Query: 529 APAGSPQXXXXXXXXXXLGNGPVTKWGADNSPLAKAIGNIGPFAAAGFN--VSYSDNGLF 356
           APA SP+           G     KW   N+ LAKA G    + A        YSD  L 
Sbjct: 256 APAASPELFVLSSIL---GGDAAVKWSHGNTLLAKAAGTASEYKATAVADLTPYSDASLL 312

Query: 355 GVVLSVPKDEXXXXXXXXXXXXKTSLSA----DAIKAGKNQLKTQVLNEADTGSSLAESL 188
            VV+S    +              SLS+    D +K+G    KT+ L+  +  +    ++
Sbjct: 313 SVVISGSCPKAIKATASESFKALKSLSSNIPNDVVKSGIAMAKTKYLSAFEPVT--LNAI 370

Query: 187 AAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAKNKISIGAVGNLAFVPYIDEL 17
           +A  L + S  S   I+   D+++   IS+ VS+      S  AVGNL  +PY DEL
Sbjct: 371 SASSLVSASKGSDAFIS-GFDKVTPASISKVVSSLLAKPASTVAVGNLDVLPYYDEL 426


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 46/193 (23%), Positives = 86/193 (44%), Gaps = 8/193 (4%)
 Frame = -2

Query: 598 YYGGELR-KEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGADN-SPLAK 425
           + G E+R ++     A++A+AV+G     P           +GN       + + S    
Sbjct: 247 FVGSEIRARDDDSPTANIAIAVEGMSWKHPDYFTALVMQAIIGNWDRAMGASPHLSSRLS 306

Query: 424 AIGNIGPFAAA--GFNVSYSDNGLFGVVL---SVPKDEXXXXXXXXXXXXKTSLSADAIK 260
            I      A +   F+ SYSD GL+G+ L   ++ + +             T  +   ++
Sbjct: 307 TIVQQHQLANSFMSFSTSYSDTGLWGIYLVTENLGRIDDLVHFTLQNWARLTVATRAEVE 366

Query: 259 AGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAA 80
             K QL+  +L   D+ +++AE +  Q L TG   S  ++   I QI+  D+++  S   
Sbjct: 367 RAKAQLRASLLLSLDSTTAIAEDIGRQLLTTGRRMSPQEVDLRIGQITEKDVARVASEMI 426

Query: 79  KNK-ISIGAVGNL 44
            +K I++ AVG++
Sbjct: 427 WDKDIAVSAVGSI 439


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 10/176 (5%)
 Frame = -2

Query: 562 DLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGADN----SPLAKAIGNIGPFAA 395
           +  HV +A++G P   P           LG G     G       S L   + N  P+  
Sbjct: 285 EFTHVVIAMEGLPVTDPDIYALACLQFLLGGGGSFSAGGPGKGMYSRLYLNVLNQYPWVE 344

Query: 394 A--GFNVSYSDNGLFGVVLSVPKDEXXXXXXXXXXXXKT---SLSADAIKAGKNQLKTQV 230
               FN SY+D+GLFG+ +++  D                  S++++  +  KNQLK+ +
Sbjct: 345 TCMAFNHSYTDSGLFGMFVTILDDAAHLAAPLIIRELCNTVLSVTSEETERAKNQLKSSL 404

Query: 229 LNEADTGSSLAESLAAQ-GLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAKNKIS 65
           L   ++     E L  Q     G   +  ++ + ID ++ +D+S+         +S
Sbjct: 405 LMNLESRMISLEDLGRQIQTQNGLYITPKEMIEKIDALTPSDLSRVARRVLTGNVS 460


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 112 YWISGRYPWRCQQQSEQSRCISLALLMIRQATILCRLH-LTLVSSTDF 252
           Y +S  + W CQ  S   R +S A L     ++ C +H   ++ S +F
Sbjct: 304 YCLSQLFNWSCQNISSYQRLVSFAHL-YSYTSVKCLVHWFQIMRSAEF 350


>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 442 NSPLAKAIGNIGPFAAAGFNVSY 374
           ++PL KAIGNI  F+     ++Y
Sbjct: 27  DAPLKKAIGNIKKFSIGSLGLTY 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,444,746
Number of Sequences: 5004
Number of extensions: 43063
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)