Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_N14
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0102 + 834660-834911,835460-835568,835891-836006,836116-83...    29   5.0  
10_08_0374 - 17312430-17312513,17312794-17313029,17313081-173132...    28   6.6  

>06_01_0102 +
           834660-834911,835460-835568,835891-836006,836116-836235,
           836398-836436,836678-836811,837035-837299,837615-837698,
           837943-838003,838748-838810,839174-839216,839632-839711,
           839831-840267
          Length = 600

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +1

Query: 448 RTAPSLVGRLHRSLLSRPQVTPNSANLSER 537
           RT PS++G L   +LSRP     S NL+ER
Sbjct: 333 RTCPSMLGMLRDQILSRPS-RSFSKNLTER 361


>10_08_0374 -
           17312430-17312513,17312794-17313029,17313081-17313261,
           17313335-17313445,17313495-17313722,17313862-17313999,
           17314159-17314375,17314452-17314564,17314919-17314921
          Length = 436

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 235 DHPIYTPSL*QQLRCADYCGKLICRTGRLTDISYRYIRTILKYK 366
           D P+ TP   +Q +  D+ G +   TG LT +   +   I+K+K
Sbjct: 29  DKPVLTPKRDRQWQANDFGGNIRVPTGILTVLIKHFFPGIVKFK 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,830,530
Number of Sequences: 37544
Number of extensions: 239196
Number of successful extensions: 474
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)