Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_N11
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr 1|||...    27   2.8  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   5.0  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   6.6  
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    25   8.7  
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         25   8.7  

>SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 280

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -2

Query: 359 HRVTHDESNVIMNSDDSGDCG*DAMMNHLFCTRQHFRLCSCFS 231
           +R+     NVI ++DD G+    + M+HL        +  C S
Sbjct: 193 YRIISPNGNVIQDNDDDGESAAGSRMSHLLTMMSAENVFVCVS 235


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 162 VKVQDSCMLLCNDAVLNFVFVFSTTWH 82
           +   D C +  + A L  + V+ST WH
Sbjct: 603 INTNDYCFVNLSPAQLELISVYSTQWH 629


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 198 KVKCISVRESSIVKVQDSCMLLCNDAVLN 112
           KV CIS  +  IVKV DS + L  D  +N
Sbjct: 140 KVVCISTAKVPIVKVWDSELQLSCDCNIN 168


>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 308 GDCG*DAMMNHLFCTRQHFRLCSCFSFL 225
           G CG +       C R HFR  +C +FL
Sbjct: 17  GLCGINRFFTLPKCIRYHFRYFACHTFL 44


>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 488 FFFLIHVIRYILFLRTH 438
           FFFL  ++ +ILF R H
Sbjct: 77  FFFLFWLLNFILFFRIH 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,550
Number of Sequences: 5004
Number of extensions: 46993
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)