Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_N05
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    29   0.31 
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb...    25   8.8  

>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 310  GVGTQEATSSDFVSFSLISALTPTLNHLLNRXYTFKPEETLXEQNKTIHT 459
            GVG +E  +  F ++ L  A T T+N L  +   F+      EQN  I++
Sbjct: 1113 GVGVEETQNKMFSAYMLTVASTSTMNGLQPKFIYFRSIYEQYEQNTAIYS 1162


>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 307 MGVGTQEATSSDFVSFSLISALTPTLNHLLNRXYTFKPEE-TLXEQNKTIH 456
           +G   ++AT+ DF ++  + A    +N + +   +FKP +  L  Q K I+
Sbjct: 45  LGTLREQATTVDFATYRSVLANKEIVNRIESSMKSFKPVKIDLNSQLKAIN 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,747,775
Number of Sequences: 5004
Number of extensions: 28394
Number of successful extensions: 49
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)