Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_N05
         (512 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr...    28   3.4  
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ...    28   3.4  
U80024-9|AAK18886.1|  300|Caenorhabditis elegans Serpentine rece...    28   4.5  

>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 226 IDLFNSCQLG*NEMEQNCGHLLTPVDFMGVGTQE 327
           ID   +C    NE  Q    ++ PVDF G+ TQ+
Sbjct: 17  IDKLRNCS---NEKRQKVSSVIRPVDFPGISTQQ 47


>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 226 IDLFNSCQLG*NEMEQNCGHLLTPVDFMGVGTQE 327
           ID   +C    NE  Q    ++ PVDF G+ TQ+
Sbjct: 17  IDKLRNCS---NEKRQKVSSVIRPVDFPGISTQQ 47


>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
           protein.
          Length = 1139

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 226 IDLFNSCQLG*NEMEQNCGHLLTPVDFMGVGTQE 327
           ID   +C    NE  Q    ++ PVDF G+ TQ+
Sbjct: 17  IDKLRNCS---NEKRQKVSSVIRPVDFPGISTQQ 47


>U80024-9|AAK18886.1|  300|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 10 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 220 DDIDLFNSCQLG*NEMEQNCGHLLTPVD 303
           +D+ LF SC L  + + +NCG L   VD
Sbjct: 151 EDLVLFQSCTLNLSNIPRNCGVLRCAVD 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,492,960
Number of Sequences: 27780
Number of extensions: 154133
Number of successful extensions: 258
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)