Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_N01
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    29   1.1  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    28   1.9  
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po...    28   1.9  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    26   5.8  

>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
 Frame = +3

Query: 93  CTRLFNYFNKHFNLFVYCLIYIFIFT-FFWVQMPCLSKSQ*SISRIFFLRIYSLILQ-*Y 266
           C+  +N++ + F    +C IY+FIF+ F+W     +S S  + + ++F   YSL++    
Sbjct: 548 CSENYNWWWRSFITPGFCGIYVFIFSVFYWFFK--ISSSSLATAVLYF--GYSLLISVLV 603

Query: 267 FFSC 278
           FF C
Sbjct: 604 FFLC 607


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 385 LYICLFHTILFSNQHINIIQNKVYNYSHRL--LLKSFKINSQFKTV 516
           +Y+     +LFS   +NI+Q  ++ +S  +  LL ++++   F TV
Sbjct: 476 IYLKQERKVLFSLNFLNIVQGGIFTFSLAIACLLSAYRVTFGFNTV 521


>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 458

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 549 YINYYCIRSITFTEINLQKKTIFS 620
           ++NYY +RS  FT +N  K+  F+
Sbjct: 401 HLNYYKVRSFRFTPVNTGKRHYFA 424


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -3

Query: 102 DVYIRNRHKQPLFTISLTLKFLVYKTKHCEVV 7
           D+Y+R + K+ + ++ + +K L   TK C+VV
Sbjct: 316 DLYLRKKLKRGIPSVFVDVKSLYKDTKKCKVV 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,167,158
Number of Sequences: 5004
Number of extensions: 63892
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)