Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_M24
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    27   1.9  
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    27   3.3  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      26   4.4  

>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 30  TIWHGIYAY*ILIRLIKFSVPFMSAM 107
           TI HG++   IL  L+KF VPF  A+
Sbjct: 154 TIPHGLWGEDILRMLVKFRVPFTRAI 179


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 499 TLWD*GQRKTVFGLLQTLPES*KRKVWCLMLPSCLADEGRLGECTNCLHD 648
           T+WD G +KT+    +   ES +  +W  ++ S   D+ RL EC N L +
Sbjct: 63  TIWDIGGQKTLRNFWKNYFESTEAIIW--VVDS--LDDLRLEECRNTLQE 108


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 402 NRLIRLPSPRTSIGASSSSPNLFDSKSV 485
           N L  LP+P + + ++ SS NLF S S+
Sbjct: 207 NSLYPLPTPTSQLPSNLSSNNLFQSDSL 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,820,293
Number of Sequences: 5004
Number of extensions: 59224
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)